Llun000773.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012666.1:5840256-5841623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.032 16.1 0.3 2 22 85 105 84 105 0.94 2 12 0.12 20 7.3 0.9 2 23 112 133 111 133 0.91 3 12 0.057 9 8.4 0.1 2 23 139 160 138 160 0.96 4 12 0.0014 0.22 13.4 1.2 1 23 166 189 166 189 0.90 5 12 9.5e-05 0.015 17.1 0.7 1 23 194 216 194 216 0.99 6 12 3.2e-07 5.1e-05 24.9 2.2 1 23 224 246 224 246 0.98 7 12 0.17 27 6.9 0.1 1 13 251 263 251 265 0.86 8 12 1.5e-05 0.0024 19.6 0.4 1 23 279 302 279 302 0.97 9 12 0.00075 0.12 14.3 0.1 2 23 308 329 307 329 0.97 10 12 0.00017 0.027 16.3 0.4 2 23 337 359 336 359 0.95 11 12 0.00058 0.093 14.7 1.4 2 23 381 402 380 402 0.98 12 12 0.00014 0.023 16.6 0.2 2 23 406 427 406 427 0.97
Sequence Information
- Coding Sequence
- ATGGACGAGACCATACCCGTGCAAACATCCCGAGGCAAAAGACTAGTCCCCAAGAAACTGGTAGATCTAGTCCAATCAAACCAAAAACCAATGTCCGTAGAGATATCCGACGGAAAATCAAAGCCTCTAGTACTAAACCTCGTACCAGTAGTCTTCCCTCAAGCAAACGAAAATCGTATTGCAGCAGCCCCCAAACCGGCCGAATCGCCCGAAAAGAATCCACCGAAAAAGAACCTCAAAGACATCTACATAATGTGCGAGCTGTGCGGCAAACGTTATCGCTCCCAAGAAACCTTCGACAAACACCTCCGCATGTACTGTCGCGACGCCATGACATGCTCGTATTGTAGCAAAAAGTTTATGAACGTAAAAATCTTCGAGGAGCATGTGAATATGCACAAAGGCATTAAACTGACATGCAGTATTTGCGGCACGCAGCTGGCTTCCAAGAAAATCCTCGATGCCCACGTCCGCCGCCATACCGGCAAATACCTTTACAAATGCAAAGACTGCGACCGCGAGTTCTATGATGACGTCACGTACAACCACCATGTGGATGCTGAACATAAGGGAATACGTTACAAGTGCGATATTTGTGGGGCTGTTTTAAAACGTCGCCGCTACTTCAATCTGCACGTCAGGAATCATAATAAAACAGAAGCGCGTTCGTTTGAGTGTAAGATTTGTAAAAAGTATTATAGCACTAAAAGTACGTTGAATGATCACATGAGGATTCATTCGGATAAGCGGTATACGTGTGAGGTATGCGGGAAGAAGTCGATTCAAAAAGCAGCGCATGATTTTCATATGGCTATACACACGGGGATGAAGCGGTATAAGTGTGAGGTATGCGATAAAGGTTATGCGCGTAAGGATATGCTGGataaacatgttttgaaaaCGCATGGTCGTACTAAGAAGGTTTGTGACCTCTGCGGGCTGGAGGTTGATACTGTTTATCAACTGAAAGTACATTTGCGCACGCATGATAACGTTGAGAAGCCTTGTGTGTGCGAGTTGTGTCCGGAACGGTTTATTGATAGAAATTTCTTACGGGCACATATTAATATGGTGCATGTTGAGAATAAACCGGATAAAATAAAGGCGGACGCGCAACGGTTGAAGTGGGTGCGAAAAAAGCAGTGTCACGTCTGTGGTGAGAAGTTTGCATCCGGTGTGGAATTTAATGAGCACAAGAAGACACATGTGCCACCTGTTTGTAATATATGCAGGCTTGTTTTTGAAAACACTGCAGAGCTAAGACAGCACTTGTTGACACATATGGATGAAGTTAATGATGCAAGTAGTGACAACTCCGATACGCTTGATACTAAGTCGGTTATTGTTGAAGTTCTGCAGGATGATTAA
- Protein Sequence
- MDETIPVQTSRGKRLVPKKLVDLVQSNQKPMSVEISDGKSKPLVLNLVPVVFPQANENRIAAAPKPAESPEKNPPKKNLKDIYIMCELCGKRYRSQETFDKHLRMYCRDAMTCSYCSKKFMNVKIFEEHVNMHKGIKLTCSICGTQLASKKILDAHVRRHTGKYLYKCKDCDREFYDDVTYNHHVDAEHKGIRYKCDICGAVLKRRRYFNLHVRNHNKTEARSFECKICKKYYSTKSTLNDHMRIHSDKRYTCEVCGKKSIQKAAHDFHMAIHTGMKRYKCEVCDKGYARKDMLDKHVLKTHGRTKKVCDLCGLEVDTVYQLKVHLRTHDNVEKPCVCELCPERFIDRNFLRAHINMVHVENKPDKIKADAQRLKWVRKKQCHVCGEKFASGVEFNEHKKTHVPPVCNICRLVFENTAELRQHLLTHMDEVNDASSDNSDTLDTKSVIVEVLQDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -