Basic Information

Insect: Lordithon lunulatus
Gene Symbol: -
Assembly: GCA_963942505.1
Location: OZ012670.1:54931274-54935541[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.35 56 5.9 0.6 3 21 120 138 120 139 0.95

2 12 8e-05 0.013 17.4 5.7 1 23 148 170 148 170 0.97

3 12 5.1e-05 0.0081 18.0 1.3 1 23 176 198 176 198 0.98

4 12 5.7e-07 9.1e-05 24.1 2.8 1 23 204 226 204 226 0.98

5 12 3.2e-05 0.005 18.6 3.9 1 23 232 254 232 254 0.99

6 12 0.00082 0.13 14.2 2.0 2 23 268 288 267 288 0.97

7 12 0.0054 0.86 11.6 8.6 1 23 295 318 293 318 0.94

8 12 1.6e-06 0.00025 22.7 5.3 1 23 324 346 324 346 0.98

9 12 1.2e-06 0.00019 23.1 0.3 1 23 352 374 352 374 0.98

10 12 6.3e-05 0.01 17.7 2.4 1 23 380 402 380 402 0.99

11 12 0.00038 0.061 15.2 8.0 1 23 408 430 408 430 0.98

12 12 0.0017 0.27 13.2 1.0 3 23 438 458 436 459 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.35	56	5.9	0.6	3	21	120	138	120	139	0.95
2	12	8e-05	0.013	17.4	5.7	1	23	148	170	148	170	0.97
3	12	5.1e-05	0.0081	18.0	1.3	1	23	176	198	176	198	0.98
4	12	5.7e-07	9.1e-05	24.1	2.8	1	23	204	226	204	226	0.98
5	12	3.2e-05	0.005	18.6	3.9	1	23	232	254	232	254	0.99
6	12	0.00082	0.13	14.2	2.0	2	23	268	288	267	288	0.97
7	12	0.0054	0.86	11.6	8.6	1	23	295	318	293	318	0.94
8	12	1.6e-06	0.00025	22.7	5.3	1	23	324	346	324	346	0.98
9	12	1.2e-06	0.00019	23.1	0.3	1	23	352	374	352	374	0.98
10	12	6.3e-05	0.01	17.7	2.4	1	23	380	402	380	402	0.99
11	12	0.00038	0.061	15.2	8.0	1	23	408	430	408	430	0.98
12	12	0.0017	0.27	13.2	1.0	3	23	438	458	436	459	0.95

Sequence Information

Coding Sequence: ATGTCTATTTCCAGTGCTAATATAAATGGTTTGGTGGAAAATGATGTCTCTATTGCAGACTGTAAAAAGGCCAAAGTCAAAATCAAACATGAAATAGTATCAGATGAAGAAGtgGAGAATGACATCAAAATGGAAACCTTGGGTAAAATTGAAGTGAAATCAGAGAGAGCTGTGAATAAACTAAAGGTTGAATCTAGTGAGACTGATGCAACTAAAACAAATGCATTTAACAGTGATATTCTTAGAGAAGAGTTGCACAAAGAGGAAGTGATTGAGCCAAGTGAGGATGAGGATTATGATGATGAAGTTGATGTTGATCAGGAATTTGAGGATGAGGAGGAGGATTATGAGAATGGATGTAAGGTCTGCAAGCAAGTGTTTGTGTGTATTGAGGACCTAAGAAATCATTATCGGATTGTGTCTGGTGGCGAAGTGAAGAATTATGCTTGTTGTGCATGTCAAAAGtGCTTTAGAGATTTGTCACAGCTGAAAGTACATCAAAGGAAGCACACTGGCGAGAAGCCCTACTCATGTAAAATATGCCTGAAGAAATTTTCCATTAAAGGCAATGTTACAAAGCATCAAATAACTCATACTGGTGAGAGGCGATTTGAGTGTGACACTTGTGATAAAAGGTTCACACAATTCGCCCATTTAGAAGACCACATGAAAACACATTCagGTGACCGCCCATACACATGCGACCAATGCGACAGCTCGTTCAAAACCAAAGCCCGTCTGCACAAACACATCAGATCCCACGACAACAAATTCTCATCCGTGTTCAAAGCGAAATTCACCAAATGCGAGGTGTGCAACAAACGTTTCACGTACGTCCAGATGGAGACCCATATGAAACGTCACGAAGACATCGGCTACACCTGCAAGTGCCCTCACTGCGACCTAGAACTAAAAACCCACAGCTGCCTTACAAGCCACCTCCGCACCATGCACGCGAATCTACGCATCTACAACTGCCCCATATGCGACAAGCGTTTCAACACGCACACTCACCTCACGCGGCACGTAAAAAGCCACGCGGGGCTGAAACCCTACATTTGCGAGATCTGCCAGCGTGGCTTTCCCAGCAATCAAAACCTTAAACGCCACCTCCAAGTGCACCGCGGTGAGAAGCCATTCCAGTGCGACCACTGTGGCAAAGCCTTCCTCACGCTGGAGAATAAAAATCGCCACGTGAGGACGCACACCAAAGAAAAACCGTACGAGTGCCCCACGTGCCATAAATGCTTCTCGCATAGCACCACTGCGAAGGAACATATGTTCACGCACACCGGGCAAAAAACGTTTGGGTGCAGCATTTGTGGCAAGGTTTACACCTTGAACAAAATACTATATAGACACATCCGTGAGCACCACGACGACGCGCTTAAAACACAGGATATTTCGCAAATCGCAATGAAGGTGACCGATGGCACTATGCCTACATTCATTAAACCTAATTTGGTGCAGTGTGAGATTAAAGAGGACGAGGATTGTAATGGAGATGTATTGGGTGATAGCTAG
Protein Sequence: MSISSANINGLVENDVSIADCKKAKVKIKHEIVSDEEVENDIKMETLGKIEVKSERAVNKLKVESSETDATKTNAFNSDILREELHKEEVIEPSEDEDYDDEVDVDQEFEDEEEDYENGCKVCKQVFVCIEDLRNHYRIVSGGEVKNYACCACQKCFRDLSQLKVHQRKHTGEKPYSCKICLKKFSIKGNVTKHQITHTGERRFECDTCDKRFTQFAHLEDHMKTHSGDRPYTCDQCDSSFKTKARLHKHIRSHDNKFSSVFKAKFTKCEVCNKRFTYVQMETHMKRHEDIGYTCKCPHCDLELKTHSCLTSHLRTMHANLRIYNCPICDKRFNTHTHLTRHVKSHAGLKPYICEICQRGFPSNQNLKRHLQVHRGEKPFQCDHCGKAFLTLENKNRHVRTHTKEKPYECPTCHKCFSHSTTAKEHMFTHTGQKTFGCSICGKVYTLNKILYRHIREHHDDALKTQDISQIAMKVTDGTMPTFIKPNLVQCEIKEDEDCNGDVLGDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -