Llun000896.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012666.1:8764639-8769837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00014 0.022 16.6 2.2 1 23 288 310 288 310 0.96 2 11 4.6e-07 7.2e-05 24.4 2.3 2 23 383 404 382 404 0.97 3 11 0.00012 0.019 16.8 0.4 1 23 410 432 410 432 0.97 4 11 2.2e-05 0.0035 19.1 1.3 1 23 438 460 438 460 0.98 5 11 1.2e-05 0.0019 20.0 1.7 1 23 466 488 466 488 0.98 6 11 0.00012 0.019 16.8 1.7 1 23 494 516 494 516 0.98 7 11 1.8e-07 2.9e-05 25.7 1.7 1 23 524 546 524 546 0.98 8 11 0.0022 0.35 12.8 0.2 1 23 552 574 552 574 0.96 9 11 1.6e-05 0.0025 19.6 1.3 1 23 580 602 580 602 0.98 10 11 3.9e-05 0.0062 18.3 0.3 1 23 608 630 608 630 0.98 11 11 3.3e-06 0.00053 21.7 1.9 1 23 636 658 636 658 0.98
Sequence Information
- Coding Sequence
- atggcTGCCACTAGGTACAGTGATTTGTGTAGATTATGTGCGACGAAGACCAATTTGGTGCCTGGGATTCATATTTTCGAGAATGAAGCGGTCAACAGACAGATTTTTAAGAAGATTGATAGTTGTCTTCCTGTgcagaTACATGAAAGTGATGAACTACCAAAAATGATCTGTGAGAACTGCATGTGCAAGCTGGAACTGCTTTTTGAGTTCCGCGAGCGCACCCTCCGAACTGAAAGCCTTCTAATCGATCTCTTCAAAGAACTGAATAGCCTCCATCTGCAGATCGATCATCAAATGAAACATGTGGACACATCCTATTTGGACCACCCTGATATTGCAATGGTGGCACCTAATGACTTACTGCCTGATCACAGCATCCACCATCTCGATTTGGCGCAGTTGTCGCACCGTGATAACATGATTATCGAGCATGAAATTGTTTTGCCACACCAAAGTGTTTCATTGGAGAATATTGAGTTGAGCAGTCATGAGTTGAATCAGGAATTGTCTAACCATAGCATGCAGGGGCAGGATATTATTAGCAGTGAGAGGTTTGGCAATGGAATTGGCTATCAGGGGCATCCAATTTTGAGTGAACAGTATGACATGAGTGCAATTCAGTTGAATGGAGATGATTTGCAACTTGAGAATAATAAGTTTAAGGGTGATCAACATGGTTCTGATGAAAACAGTCATTTTGAGGAATCCAACAGCATTAAAGTTGAGGAAGACAATTCACAAACGAAAGTAATGACTGAACACAAAGATAATTTCCTACTTAACTCGGACAGCACTAGTGATCTATCTAATAATGGAAGCAGTATGAGCAATCTCCTTACAAGCTCTGATAAGGATTGGTTTTACTGCAACTTTTGTGGAAAATCATTCGATGATAGCAATCTGtttgaaactcatttcaaagAGCATGTTAGTAATAAAAGTGAGGTTTCAAATCAATTTGAATCAACCACTGAGGTTAATACCCAGAGGGCAGATGTAGGTGAATCTGATGATTTGCAGaatttGAAATTTCAAACAGCGGAGGGAGAAGAAGACAATGACCTGAATGATCCGGACTACCCAGAAGATGACGAGGTAGAGGGAGAACCTCAAGTGGATAAAAAGCGGAAATGGAGTCCGAAAGAGTGTAAAGTATGCGGGAAAACTTATAAAACCAACTATAAACTAACCGAGCACATGAGGAAACATACCGGAGAGCAACCGTTCAAATGCAACAGCTGTGATAAGGCGTTTAGGTCGAGAATAGGACTAGCGCAGCATGAGGCCAAACATACGGGACAGTACGATTACTCGTGTCCCATATGCGGTAAAGGGTTCCAATGCAAAAGCTATTTAATGGTGCACCAAAGGGTGCACTCGGATGAAAAACCTTATCCTTGCACCACTTGTGGTCGCAATTTTAAAACCAAACAGTCGTTACTGGACCACACGAATCGGCATTTAGGGGTGAAACCGTACACGTGTGAAACGTGCGGGCGTAGTTTTATTACAAATGGGTTATGTAAGGCCCATCAAAAAGTCCACTCAGGCACGGACAATCGTAAATACTCCTGCAAAGTGTGCAACAAAATGTTCGTTTCGAAAAGCTACTTGCAGACACATCTTAGGATACATACAGGAGAGAAGCCTTTTATGTGTGAGGTTTGTGGAAAAGGATTTTTAACACGAGTAGATCTACGAATACACTCCACAATGCACACAGGCGAGAAATCATATGTTTGCGAAATGTGCGGCAAAGCATTTGCAAGACGTGATGCCCTACGATGCCATAGGAGATCCCATACCGGCGAACGACCTTACACTTGTGATATATGCGGTCAAACTTTCACGCAATTCTCCCCAATGGCCATCCACAGGCGACTGCACACCGGTGAACGGCCCTACGAGTGTGATAAATGTGATAAGAAATTCGTCTCAAAGTCCACACTAATGGTGCACTCAAAGAAGCATGTCACGTGA
- Protein Sequence
- MAATRYSDLCRLCATKTNLVPGIHIFENEAVNRQIFKKIDSCLPVQIHESDELPKMICENCMCKLELLFEFRERTLRTESLLIDLFKELNSLHLQIDHQMKHVDTSYLDHPDIAMVAPNDLLPDHSIHHLDLAQLSHRDNMIIEHEIVLPHQSVSLENIELSSHELNQELSNHSMQGQDIISSERFGNGIGYQGHPILSEQYDMSAIQLNGDDLQLENNKFKGDQHGSDENSHFEESNSIKVEEDNSQTKVMTEHKDNFLLNSDSTSDLSNNGSSMSNLLTSSDKDWFYCNFCGKSFDDSNLFETHFKEHVSNKSEVSNQFESTTEVNTQRADVGESDDLQNLKFQTAEGEEDNDLNDPDYPEDDEVEGEPQVDKKRKWSPKECKVCGKTYKTNYKLTEHMRKHTGEQPFKCNSCDKAFRSRIGLAQHEAKHTGQYDYSCPICGKGFQCKSYLMVHQRVHSDEKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYTCETCGRSFITNGLCKAHQKVHSGTDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYTCDICGQTFTQFSPMAIHRRLHTGERPYECDKCDKKFVSKSTLMVHSKKHVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -