Llun000894.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012666.1:8750806-8757417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.98 1.6e+02 4.5 0.2 2 15 66 79 65 82 0.72 2 13 0.022 3.4 9.7 0.1 1 23 340 362 340 362 0.95 3 13 3.8e-05 0.0061 18.4 1.6 1 23 370 392 370 392 0.99 4 13 2.8e-05 0.0044 18.8 0.7 2 23 400 421 399 421 0.97 5 13 7e-06 0.0011 20.7 1.0 1 23 427 449 427 449 0.98 6 13 4.1e-05 0.0064 18.3 1.9 1 23 456 478 456 478 0.99 7 13 0.00021 0.033 16.1 1.1 1 23 484 506 484 506 0.95 8 13 2.8e-05 0.0045 18.8 0.1 1 23 512 534 512 534 0.98 9 13 9.6e-07 0.00015 23.4 1.2 1 23 540 563 540 563 0.96 10 13 2.5e-05 0.0039 19.0 0.7 1 23 569 592 569 592 0.95 11 13 3e-05 0.0047 18.7 2.6 1 23 598 620 598 620 0.99 12 13 0.00015 0.023 16.5 0.4 1 23 626 648 626 648 0.94 13 13 0.0019 0.31 13.0 0.1 1 23 654 678 654 678 0.92
Sequence Information
- Coding Sequence
- ATGAGTGTGGGTGCTAAGGATCCAAAGGAGAATACTCACTGTATTATATGCAGTGGGAGGGTTGGTGTGTCTACAAGGAATTCACTACAGATTTTCCATAAAGAGACACAAACATGTTCCGAACGGCCATTGAGCTTTTTAATGTCACAAGTTTTAACCACAGATATATCTGAAGAAAATGCACATTCCCACCTTATCTGCAAAAAGTGTTTTAAATCTTTTGATGAGGTGGATGAGCTTGAGCAGCGACTGATGGATTTGAAGGTGGTGCTGAGAAACAACTACAAAAGGTCGCTGCAAAAATTCAATCTGGGTGAAGAGGAGGATGCTGAAGAGGAGGAAAAACTACAAGAGGAGATGAAAAGCAAAGAGAATCCAATGCCAAAGAAAATTTTGGATATACCATCATCAGATGATGAAACATCACAGgATGCTGAACCTGAACCTGAACCAGAGCCAGAACAAGAACTACAACAACAAGAAGAAGGTGTAGAAGAGGAGCAAGAGCTATCCAAAAAGCCTTCTCTTCAAACACTGGAGGAGATTGAAATGGAGCTGGTGAAAATACATGGAGATGAGGGTGACGAGGAAGCCAAGCCCATTGAAGCTGAAATAGAGACTTCCGATCCGGAAATGTACTTGTTCAAAAACGGCAACGGTGAAGTCGATGAGcaagaaattgaacaagacaACACAGAAGCGCTATTGGAGGCGGCTGCGATCGCTGAAAAAGATCTAGAGAAAGATGTGAAAACTGAACACGATGAAGAGAAACCCAACATTCTCAAACGGAAAGCATCGATTGGTAATAGTAAAAAAGAACCGCCACTGAAGAAAATTAAGGAAGAGCAGGAGGACGAGGAGGAGGAGGATGAGGAACTTGCAATCAGCAGCAATGGtATGGTGGCACGGGATGGTGACAACTACACGTGTTTGCTCTGCGAGGGCGACGAAACGGTTTGCGGTGAGGCCAAAGCCATCACGCAGCACATCAAAATCGCGCACGACGCGCGCATTTACATCTGCGACGTGTGCGGCGACGATTTCAAAAAACGCACCGAACTCTCATTACATTTGGACGAGCACGTCGCCACCGAGGAGGGCGACTTCCAGTGCGAGGTGTGCAATCGTATTTTTAGTAACTTGAGACTGTTCCGCATTCACAAGCGAATGCACTACCCTCAGAACAAAGCGTGGACTTGTGAGACTTGTGGCAAGAAATATAGTTCGCGGAATTTATTGGAAGAACATACTAATACTCACACCGGTCTGAGGCCATATGTGTGTCAGTTGTGCGGCAAGGATTTCGCATCCAAATATACGTTTAAGGCGCACGAGAAGACTCATGAGGTGCGCCCGAGGCCGTTCCAGTGTGGTCAGTGTAATAAGTCGTTTTTGAGTCAGCAGAATTTAACGCAGCACGAACGCACGCATAGTGGAATTAAGGAGTTCGCTTGTCATTTGTGTGATAAACAGTTCGGATCTGCTCATAACCTTGAGGTGCACTCAATAGTCCACACAGGCTACAAGCCGTTCATCTGTGGATTGTGCGGGAAAGCGTTTGCTCGCAAAGCGGAAATCCGCGATCACGAACGTACCCACACCGGCGAAAGGCCCTATCAGTGCGAATTCTGCGGTGCTACCTTCAGCCAGCGCTCCAATCTTCAATCACACAAACGAGCTACGCATTATGACGACAAACGGTATAAATGCGAAGAGTGCGGCAAAGGATTCAAACGACGAAGACTACTCGACTACCATACCAAAGCCGCACACACCGGCGAGCGCCCCTTCAAGTGCACCGTTTGCGAAGCTACTTTCGTATACCCAGAGCACTTCAAGAAACACCGACGCATCCACACCGGTGAAAAGCCTTTCTTATGTGAAGTATGTGGCAAGGCTTTCAACAGTCGCGACAATCGCAACGCGCATCGTTTCGTGCATTCCGACAAGAAGCCCTACGAATGTCTAGTGTGTGGTGCCGGTTTTATGCGCAAACCGCTCCTTTACCAGCACATGCAGTCGCAAGGACACTTAAATGACACAATTGTTGTAAACCAGCCACGGCTGACAACGGACGACGATCAAATTATCACAGTAAACGCTCATGGCGAGATGGAATTGGTGGAGGGCGATGTCAGCCGGTTGGAATCTATTGACGAGGACGTCACGCAGGAGTCCAAGCTGTATATAGCCGAGCACATGTTGGTGGATGGTACAAAGGTTTTGGGTCATGCTGAGGGCACGCTGATTCTAGGCGATGACGGCGAGGAGGATGGTGAAAATGTTGAGCACATAATTATTGATGGACAGCAAATCCAATTTACCGAAGCCGACGAAGAGGAAGAAGGCGAGATGGAGGACGAAGAAGAGGGTGAGCACATACTGACGACAACGGACGACTATGAGGGTATAATAACCCCTGAAGCACTGGCTGATGGGCAGACCCAAATCATTCAAACTAAAGACGGCCCTGTACAGCTAGTCGCGGTACGCATTCCTAACGATAAAGGCGAGGAGGAGGAGGCATGGATCAAGATTGTGCCTGAGGTTGCCGAGTAG
- Protein Sequence
- MSVGAKDPKENTHCIICSGRVGVSTRNSLQIFHKETQTCSERPLSFLMSQVLTTDISEENAHSHLICKKCFKSFDEVDELEQRLMDLKVVLRNNYKRSLQKFNLGEEEDAEEEEKLQEEMKSKENPMPKKILDIPSSDDETSQDAEPEPEPEPEQELQQQEEGVEEEQELSKKPSLQTLEEIEMELVKIHGDEGDEEAKPIEAEIETSDPEMYLFKNGNGEVDEQEIEQDNTEALLEAAAIAEKDLEKDVKTEHDEEKPNILKRKASIGNSKKEPPLKKIKEEQEDEEEEDEELAISSNGMVARDGDNYTCLLCEGDETVCGEAKAITQHIKIAHDARIYICDVCGDDFKKRTELSLHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCETCGKKYSSRNLLEEHTNTHTGLRPYVCQLCGKDFASKYTFKAHEKTHEVRPRPFQCGQCNKSFLSQQNLTQHERTHSGIKEFACHLCDKQFGSAHNLEVHSIVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCEECGKGFKRRRLLDYHTKAAHTGERPFKCTVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQIITVNAHGEMELVEGDVSRLESIDEDVTQESKLYIAEHMLVDGTKVLGHAEGTLILGDDGEEDGENVEHIIIDGQQIQFTEADEEEEGEMEDEEEGEHILTTTDDYEGIITPEALADGQTQIIQTKDGPVQLVAVRIPNDKGEEEEAWIKIVPEVAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -