Basic Information

Insect: Lordithon lunulatus
Gene Symbol: -
Assembly: GCA_963942505.1
Location: OZ012671.1:41329240-41332327[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.8 1.3e+02 4.8 0.0 2 20 112 130 111 132 0.91

2 14 0.0011 0.18 13.7 0.0 2 20 141 159 140 160 0.94

3 14 0.00065 0.1 14.5 3.7 1 23 168 190 168 190 0.97

4 14 3.2e-07 5e-05 24.9 0.6 2 23 198 219 197 219 0.98

5 14 3.6e-05 0.0057 18.5 0.2 1 23 327 349 327 349 0.97

6 14 0.0062 0.99 11.4 1.6 1 21 357 377 357 378 0.96

7 14 1.2e-05 0.002 19.9 2.1 1 20 433 452 433 455 0.93

8 14 0.00039 0.063 15.2 0.4 1 23 460 483 460 483 0.93

9 14 2.4e-05 0.0038 19.0 0.2 1 23 489 511 489 511 0.98

10 14 0.00049 0.078 14.9 3.4 1 23 518 540 518 540 0.98

11 14 0.0014 0.22 13.5 0.4 3 23 548 568 546 568 0.97

12 14 5.4e-05 0.0085 17.9 0.2 1 23 574 597 574 597 0.96

13 14 0.0074 1.2 11.2 0.3 1 23 609 631 609 631 0.97

14 14 0.02 3.2 9.8 0.0 2 23 708 729 707 729 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.8	1.3e+02	4.8	0.0	2	20	112	130	111	132	0.91
2	14	0.0011	0.18	13.7	0.0	2	20	141	159	140	160	0.94
3	14	0.00065	0.1	14.5	3.7	1	23	168	190	168	190	0.97
4	14	3.2e-07	5e-05	24.9	0.6	2	23	198	219	197	219	0.98
5	14	3.6e-05	0.0057	18.5	0.2	1	23	327	349	327	349	0.97
6	14	0.0062	0.99	11.4	1.6	1	21	357	377	357	378	0.96
7	14	1.2e-05	0.002	19.9	2.1	1	20	433	452	433	455	0.93
8	14	0.00039	0.063	15.2	0.4	1	23	460	483	460	483	0.93
9	14	2.4e-05	0.0038	19.0	0.2	1	23	489	511	489	511	0.98
10	14	0.00049	0.078	14.9	3.4	1	23	518	540	518	540	0.98
11	14	0.0014	0.22	13.5	0.4	3	23	548	568	546	568	0.97
12	14	5.4e-05	0.0085	17.9	0.2	1	23	574	597	574	597	0.96
13	14	0.0074	1.2	11.2	0.3	1	23	609	631	609	631	0.97
14	14	0.02	3.2	9.8	0.0	2	23	708	729	707	729	0.94

Sequence Information

Coding Sequence: ATGGATCCTCCGGATTATCTAATCCCGCAGATAGTGCAGGAGGACAGTATTTACACCGGCGTCGAAGTGTACGATCCGGACTACCACGATTACGGCGCGGCGGTAGAAACAGTAGGCGACGATATACTCGAACCTAACCTACGTGTGAGCAACAATTTATTTGATTCACACACGGAGGATTTGCTCAGCATTAAAATCGAACAGGATGAGGCGATACAAGCCGGCGAATGTGTGGTGCATAATGCTACTGATGATGAGAGtatGGCTGTGGAAGCCTTACGTCAGCTCGGAAATGCAACATATACAGGCAAATCCGAATGCAGTGCAAACCTTCAATGTTCCCCCTGTGATATGGAGTTTACTGCGTCCTCCGAATTGGGCAATCATCTCGATATAGGCGTCCCATCGCACACCCCATTAATTTGCCCGATTTGCAACGAGCAGTTTGAgcgaaaaattgatttaaataatcatttagTTTGTCATGCTGTAGAAAGACCTCATTCTTGCCGCTTGTGTGGTACTTTGTTTATACATAGACAGGATTTGCAACAACACATGCTAACTCATGGGAGCAATTTAAGCAGTAATCAGTGCCAGATTTGTGGGCAACAGTTTAATAGGCCTTCAAGTCTAACGAATCATATGAAAATACACAACTACCAACCAGGTCGTGCGTTAGTAGCCCCGAAAATCGAGGGCAATTCAGAGTTAAAGGACATCCTCACGGGAAATGCGGATCCGCAAATGCAGCCAGTACAAAAATTCACGCTCCCTAGCATCAACAATATACAACCGATGAACAGTTGGAATTTGAATTACGAGCCCGAGAGTTTCAATTCTGAAATGAATTTGCAAGTTGGGGATGTTACTATTAATACAACTCTAGAGGTGGCTGATGAAGTTGAAGAAGAATCTGTTGATGATCCCTTAATAGATAAATTAGTACCCACACTGGATGTCACTTCTAAAAAACCGTACGCGTGTACGAGATGCCCTAAAACATTTGCTAGAGAAAAAGCTCTAATTTCACACTTGAATTTACATAAGGATTTTCTTGATAAATCGTACACTTGCAATAGATGCGAACAGTCATTTAATAGAGTAACGCTATTGGATAAGCATTTGAAACACTGTGGGGTGACTGAGAAAAAGGTGGAACGGATAAGAACAATAGTGGAAATCATTAAAACACCAACTGCTGAAGTTACAGCTCCAAAACCTAGACAACCCCCATCACCTACATTAATGAATGACGCTAGTTTCGATATTAATGTTTACAATAAGATTTACAAACATGTATGCTCGGAATGCGGtaaaaattttactacaaagcAAAAGCTGTTTAGGCACATGTGGATTCACAGAAAGAAGGTGTTTTCATGTGAGCTTTGTCCGAAGAGTTTCGAACAGCAACAAATGTTAGATACGCATAGATTGGGGTCGCACCAGTCGGGATCGCCGTATGTGTGTTTGGAATGCGGAAAGAATTTCTCCAGTCGACAAgGCTTGTGGGAACACAACAGGATCCACACCACTGACGTGAACTCCTTCAAATGCACCCAATGCTCAAAAACATTCAGCAGTCGTCAAGGCTACCTCATACACAACCGCAAACACAACAACGAGCGCCCCTACGGCTGTCGGTTTTGCTGGAAAGCCTTCCGCGATGGTGGTACTTTGCGTAAACACGAACGCATTCATACCGGTGAACGACCACACGTGTGTCCGCTCTGCGAAAAGGCTTTCAATCAAAAAGTCGTCCTTCGCGAGCACATTCGTTGGTTGCACACGGCGCCATTAAGTCCTAGCGACGATGGGCAATTCGTTTGTAGCATCTGTGCCCTGGGGACATCTGATAAGGACGAACTGTGCGCGCATTATGTCAAACACAGTGATCAACTGGCGCAATTGGCGAAAGACGCGTCGAAAAACAATATCAGCAACAATAAGTTGGATAAAGTCGAGAAGGTTGTGCCTAAAGTTGAAGTGTTTTCTAGGGACAAATATGTGGCTGATATTCAGCAGGAGGAATCCACTACACGGCAGATTTTTGTGGATAGCGGGGTTATAACGGAGAAAATTAATGGCGCTAATGATGTTGTGATAGCAAGTGGCGTGGAATGCGACTTGTGCGGCGATGTTTTCGCGAATAAAGCTGCGCTAAGTGAACATGTCGTTGTGCATATTtaa
Protein Sequence: MDPPDYLIPQIVQEDSIYTGVEVYDPDYHDYGAAVETVGDDILEPNLRVSNNLFDSHTEDLLSIKIEQDEAIQAGECVVHNATDDESMAVEALRQLGNATYTGKSECSANLQCSPCDMEFTASSELGNHLDIGVPSHTPLICPICNEQFERKIDLNNHLVCHAVERPHSCRLCGTLFIHRQDLQQHMLTHGSNLSSNQCQICGQQFNRPSSLTNHMKIHNYQPGRALVAPKIEGNSELKDILTGNADPQMQPVQKFTLPSINNIQPMNSWNLNYEPESFNSEMNLQVGDVTINTTLEVADEVEEESVDDPLIDKLVPTLDVTSKKPYACTRCPKTFAREKALISHLNLHKDFLDKSYTCNRCEQSFNRVTLLDKHLKHCGVTEKKVERIRTIVEIIKTPTAEVTAPKPRQPPSPTLMNDASFDINVYNKIYKHVCSECGKNFTTKQKLFRHMWIHRKKVFSCELCPKSFEQQQMLDTHRLGSHQSGSPYVCLECGKNFSSRQGLWEHNRIHTTDVNSFKCTQCSKTFSSRQGYLIHNRKHNNERPYGCRFCWKAFRDGGTLRKHERIHTGERPHVCPLCEKAFNQKVVLREHIRWLHTAPLSPSDDGQFVCSICALGTSDKDELCAHYVKHSDQLAQLAKDASKNNISNNKLDKVEKVVPKVEVFSRDKYVADIQQEESTTRQIFVDSGVITEKINGANDVVIASGVECDLCGDVFANKAALSEHVVVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -