Llun015311.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012668.1:53327742-53331552[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00069 0.11 14.4 1.5 1 23 13 36 13 36 0.96 2 19 0.00014 0.022 16.6 5.6 1 23 77 99 77 99 0.97 3 19 1.8e-07 2.8e-05 25.7 1.9 1 23 105 128 105 128 0.97 4 19 9.9e-05 0.016 17.1 0.1 1 23 134 156 134 156 0.98 5 19 4e-05 0.0064 18.3 0.8 1 23 162 184 162 184 0.95 6 19 3.9e-05 0.0062 18.3 0.5 1 19 190 208 190 212 0.95 7 19 2.2e-05 0.0034 19.1 0.5 1 23 218 240 218 240 0.99 8 19 0.74 1.2e+02 4.9 0.1 1 11 246 256 246 259 0.90 9 19 0.0017 0.27 13.2 0.7 2 23 278 300 277 300 0.96 10 19 5.1e-05 0.0081 18.0 3.2 1 23 357 380 357 380 0.97 11 19 0.00012 0.02 16.8 0.1 2 23 391 413 390 413 0.92 12 19 1.7e-05 0.0027 19.5 0.3 2 23 441 463 440 463 0.95 13 19 0.0013 0.21 13.6 0.7 1 23 471 494 471 494 0.93 14 19 0.006 0.96 11.5 5.3 1 23 540 562 540 562 0.96 15 19 0.18 28 6.8 0.6 1 23 585 608 585 608 0.94 16 19 3.7e-05 0.0059 18.4 2.2 1 23 616 639 616 639 0.96 17 19 0.042 6.6 8.8 1.5 2 21 718 737 717 739 0.94 18 19 0.0003 0.048 15.5 0.4 1 23 745 768 745 768 0.97 19 19 0.00057 0.09 14.7 0.2 2 23 775 796 774 796 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGACGTCCTTCCAGCGctattacaaacaaatattcttGCAACATCTGCACAAAAGCGTTCTCCCAAAACAGCATAATGTTGAGACATAAGCGCCTGAAACATTCCGGTACGCACCAAGACCCCCAACCCGTTCCAAAAAGCTCGCCGAAAAACTTACAACGTGCCAAAAACACCGAGCTGGCACGTCGCTGCAAAGTTGTAACCTCCGACGGTTCTCCCACCTACAAATGCGAAACATGCCAAAAGCACTTCAAACACTCATCCGGCTTGATCACGCACCAAACTCTTCACACCGGCGTGAAGAACTACTACTGCCACATTTGCGGCAAGAACTTCCGCCAGTCGAGCGGCCTCACAATCCACATTAAAGTGTttcataagaaaattaaaaactacCCGTGTGCCGTGTGCGATATGAAATTCGCGAGTAAAGCGCTGTTGGACGAGCACATGAACAAGCACACGGATACGCGTCCATACGTGTGCGACGTGTGCGGGAAACTGTTTAAGCAAAGCAGCAGTTTGTATGTGCACAAGTTGTTCCATGGCGATAATTTTCGTTTTGAGTGTACTGTGTGTGATAAGAAGTTTCGCAGGGCTACCGAGTTGAAGGTGCACAGTTGGATGCACACGGGACATAGACCGTATAAGTGTGATGTTTGTGGTGCTAGTTTTCGGATTAGTAGTATTCTTAAGAAACATTTGAGGACGCATGGTGTTGGTAATGCGTTTGTTTGTTCGGATTGCGGGGCGAATTTCAGTATGGAGAGATGTGCGGATTTAAATAAATCAGCAGCCACAATACGGGTAAAGGCGGACGGTATAGTTTGCGAGTTATGTGAGCGAACTTTTATCTTTTCAAAAGACAAAAAACGGCACCTACAGACAGTTCACAAACTACCGAAACTCGTTGCGCAGCACATTACAAAAGCTGAGTTGCATGCAATTACTTTAGTCTTCGACGATGTTAGAGCATGTCCAATCTGCCATTACAAGACTAACTGTCGCAATAACGTGTTAGAACACTTGAGTAAGGAGCATAATATTGGGAAGATTTTTATGTACACATGTAAAGAATGTGGTAAGACATTCTGTAACGTACGTTGGTTGTATCTGCATCGTCGGAATGAACATAATTTGACCTTAAAACAAGACGATAGCATTCGTTGTCAGAtatgtaatgaatatttcaaaacagCGGGTGATTTGAATAGACATGTGATACTAATACATAATAAGGAGGATGAGGATGTTTATTCCAGTAACGAGAAACGGCCTGAAGGGAGCACGTTTCGATTATACGAAGACGTTTTAACTTGTGAGATTTGCGAGAAAAAGTTTATTAGACGATCCGATTTAGTGGagcatttgaaaaatatacataaaatcgAAAACCTTTTAATATACAATTGCAATCAGTGCGATGATGCTTTTACACATAGGGAGAATTTGATTGCGCATAATATGTATGCACATTCTACTACAAATGATATAGAATCAAACAGAATGGTTGATACATCCGAAACAATTAAAGATTATACTGTATTTAATGTTGAGGCTGTTGATATATTAACCAGCCTGGATGATTTGATCAGTAAAACCACAAATGCTTATCATTGCCATACTTGCAAAATAAGCTTTACTACACATGCAGCCGTAAAAAAACACTTGCTTGCACATAGAAACGATAGTAAAAAAGATAAACTAATTTACCCCATAAACAAGAAAGCTAGATTTGAAAGTAACTATTTTTGTtcaatttgcaaaatatattttaataattacccaATTCTCCAAACACATTTGAAAGAAGTGCACAATACCATCACTGCTATACaacataaatgtaaaacatGCGGTAAGATGTTTCGCAAACTAAACGATCTGGTTGTGCATATAAACCAAACACATTTTCTCGAATTAAGACCAAAACAGTTTGACAAAATAACACCCACACAGGATAATAAAGACTTTCAAGATACCCCATATGTGGAATCAAAACAGTTTATAAACAAGTCTAAAAAAAAACGCCAACGTAATAATAAAGACGTACCTATCAAAGAAACTGAACTTGATATAATCACGGTAAAGGAAGAAAATAAACCTGATGTAGCTGTTTGGATAAAACATGACCTAAGCTTGAATAAGTGTGAAATATGTAAGAAAACCATTAAAACCCCTTCCGACATTTTGTTACACATCAAATGTCATACCGCTGGTGAGGATTTTATTTGCGACATCTGCAGGGAAGCGTACTGCTCTAAAATCGCCCTACAAAATCACATAAACTCAATACATAACAACTTTGGGTCCTGCCAGTGCGATATTTGCGGGGCAGGATTTAGCTCGGAAGCGGGGCTCATATTGCATAAGATGAAACACACGAACAATCGCCCGAATACGAATTAG
- Protein Sequence
- MPRRPSSAITNKYSCNICTKAFSQNSIMLRHKRLKHSGTHQDPQPVPKSSPKNLQRAKNTELARRCKVVTSDGSPTYKCETCQKHFKHSSGLITHQTLHTGVKNYYCHICGKNFRQSSGLTIHIKVFHKKIKNYPCAVCDMKFASKALLDEHMNKHTDTRPYVCDVCGKLFKQSSSLYVHKLFHGDNFRFECTVCDKKFRRATELKVHSWMHTGHRPYKCDVCGASFRISSILKKHLRTHGVGNAFVCSDCGANFSMERCADLNKSAATIRVKADGIVCELCERTFIFSKDKKRHLQTVHKLPKLVAQHITKAELHAITLVFDDVRACPICHYKTNCRNNVLEHLSKEHNIGKIFMYTCKECGKTFCNVRWLYLHRRNEHNLTLKQDDSIRCQICNEYFKTAGDLNRHVILIHNKEDEDVYSSNEKRPEGSTFRLYEDVLTCEICEKKFIRRSDLVEHLKNIHKIENLLIYNCNQCDDAFTHRENLIAHNMYAHSTTNDIESNRMVDTSETIKDYTVFNVEAVDILTSLDDLISKTTNAYHCHTCKISFTTHAAVKKHLLAHRNDSKKDKLIYPINKKARFESNYFCSICKIYFNNYPILQTHLKEVHNTITAIQHKCKTCGKMFRKLNDLVVHINQTHFLELRPKQFDKITPTQDNKDFQDTPYVESKQFINKSKKKRQRNNKDVPIKETELDIITVKEENKPDVAVWIKHDLSLNKCEICKKTIKTPSDILLHIKCHTAGEDFICDICREAYCSKIALQNHINSIHNNFGSCQCDICGAGFSSEAGLILHKMKHTNNRPNTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -