Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: gammaTub23C
Assembly: GCA_018904235.1
Location: JAEIFU010000056.1:164601-184067[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.018 0.77 10.2 0.6 1 23 1016 1039 1016 1039 0.96

2 8 0.012 0.51 10.7 0.2 1 23 1044 1067 1044 1067 0.98

3 8 0.2 8.9 6.8 2.3 1 23 1260 1283 1260 1283 0.93

4 8 0.00056 0.024 14.9 2.1 1 23 1291 1313 1291 1313 0.98

5 8 5.8e-05 0.0025 18.0 0.2 1 23 1320 1343 1320 1343 0.97

6 8 2.1e-05 0.00091 19.4 1.4 1 23 1349 1371 1349 1371 0.97

7 8 3e-06 0.00013 22.0 0.8 1 23 1376 1398 1376 1398 0.99

8 8 0.091 3.9 7.9 6.8 1 23 1404 1426 1404 1426 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.018	0.77	10.2	0.6	1	23	1016	1039	1016	1039	0.96
2	8	0.012	0.51	10.7	0.2	1	23	1044	1067	1044	1067	0.98
3	8	0.2	8.9	6.8	2.3	1	23	1260	1283	1260	1283	0.93
4	8	0.00056	0.024	14.9	2.1	1	23	1291	1313	1291	1313	0.98
5	8	5.8e-05	0.0025	18.0	0.2	1	23	1320	1343	1320	1343	0.97
6	8	2.1e-05	0.00091	19.4	1.4	1	23	1349	1371	1349	1371	0.97
7	8	3e-06	0.00013	22.0	0.8	1	23	1376	1398	1376	1398	0.99
8	8	0.091	3.9	7.9	6.8	1	23	1404	1426	1404	1426	0.99

Sequence Information

Coding Sequence: ATGGTCTGCACGAGGCCAGATAAATCCAATCATAATTGCTCCATTTCTATTTTGAACATCATTGAGGGCGAGAGGGATACCATTTTGGTGCACATATCGCTGCAACGCAAGATGGCTCGAGGAATCAGCCGCGATGATGGACTACCCCAAGAGATTTGCCGTCAATGCAAGGCGCAATTCCTCATGGTGGCCAAATTTAGGCGAAAATGTGTTCGTATGCAGCAGCGTCTGCAGGATTTTGCTCAAGAGATTGCCGACCGTCAATCCGAAAAACTGGCCAAGCGACAGCTACAACAACAGCAGCACAATGATGCCTACATTCATCTACCCGAATCACAGATGGAACGCAAACGTCGCCTCAAGCCAGCGATTGAGGTGGCATCACATGAACAACCAGCGCATCCAGAGCCACAGCCAAAGCATGTAAAGACTGAAATTGAAGAACTACCGCCACCCAAGGTACGACGACTGCAGCTGCGATTGCACAAATTGCGGGCCAGTCTCACCGAAAGCTTGGAACAACCAGCTAAAATCGAAACCGCCTGTGAAAAGATTAACCTACCCTGGAAAACGAAAGCGGCAAGGAAACAATTGTCGGAGAACTGGTCTTCCGAAATGGAAGTGGAGGGCAGGAGAAGTAACAGTAGCAGTGATTTATCTGTAGGACCTTGTTGTGGTTTCGAGAGCGGCGATAGCAATCTCTCATCATCATCCACTTCAACTCAGTCCAAGGCAGAGCTTAAATATCCCAAGCGGGGGATGATGCCGCGTCGTGGACGTCGTTCACGTAATGCGCCTGTGTACACATCAGCAAAACGACAAAAACGTACGCTTCAAAAGAAAACACCTTCAGATGCAAAAGAAATGACTGAGAATGCAAAGTCTGATGAAGTCTCTTTTCTGGTTTCCTTTAGAAAGCCACAGGACATAACTTCTAGCAGTGAAAACTTTATCGAAGTTCCGCTTAGTAATTTGGATGAACTTTCGGAACAACTTTACCCCGCACAACAGCCAGACAAAACAGTGTCGTGTTTAGAAACCTCTGACGAAATCCCGCCCAATACATCGGAGAAGACCACGGATAGCAGTTCCAATGAAATTTCTGTAGAAAATAAGCCAAACTCCTCAAATGAACAGCCAGAAACGTTTTTAAATGAAAAATCTACCGATATTCTCTCCACCAAATCGCAAAATGAGGAAATAAAATCAACTTCCAATCATATTTGCAGCAAGCCAGAGGAGGACAAGACCAAGGAAATCCTCTTCAGCACTGATAATGAAATTCCCCTCACAAATGAATCTACGGAGAGCTCTTCTGATCATCAAAAATCCTTACCGGAAACCACTTCAAACGAATGCTCCAGCAAGTCTGAGGAGTTGCCGGAAACCAGTTCCTATGAAATTGCCCACACAAATAATTCGACGGAAAACTCTGTCTCTGAGAATCCCTCTAAAAAGCCTCGACAAACGACATGTTCTACCAATGAGACAGACGAAATTCCTTCAAGTACGCAGTCGGAAATCTGTTGTACCGTCACCTCGTCAACTGAACCTAGCGAACCAACCGAGCTTATTGTCAGCATACCCCTAGAAGTACTTAACGATGATCTACAGCGTCGACTCTGCGTGGAGGGAGAAGTGGATCCGGCCCAAGAACAGGAGTCTGCCAAGGAAGATGACGATGTTAATAATAATGCAAATGCTGAAAATTTTTGTCAGAGTGCTACAGCAGATAGCTTCAATGCTGCTGTGGCACTCCCAATACCCCTTGAAATTGAAGCAAAACAAGAAACGGAAATACCACTCCTGGTAGCAGAAACTCCACCAAGAATAGATGACAAAAAGAAGGAACAGGAGAATGAGAATATGCAGGAGGTGGAGGAGAATGAGGACCAGGAATTGCCCAGGGTGAGAACGGCTCCCACACCTATGGATTTCTTGGCCGAATTTGAGAAACATTGCGAGCTTAGAACAAAAACACCTTCTCCTCCTCCTTCTCCTACACCACCACCACCAGCTCTTAATGATTTGGAGGCCAAGCAACAGCTGGAGGTCGAAATGAATGATGTGGAGAGCACATTGAATGGCATTTTAAATGAAATGCAAGATCAGCATATGTATACACCAACATGTTCGCATATAGATGAGTTCCTAACACCCGCTGATTATGCACCCCTCACTGAACAGGAGCCGCCTGCCCCTGAACAGCCGACGCCAGCAGCCACTAACGGGAGAGATCTCTTTGATAGCAATAGCTTTACCAATGAACTAATAGGCTTTCAAAATGATATTCCCTGCTTTGAGAATATTGAAGCCTCACCGGAGTCACATCAGAATTTGCAAATGGAGCTGACGCAGTTGCTCAATGAGTTGCAGCCGGCTGCTGCTTCTGCTTCTGCTAGTCAAGAGCCAAATCTAAGCAGCTATGAGTCCATACCAGCATATACATCAGTGGATACTGCAGCCACATGGCCCCCAACGCCACAACAACAGCAGCTGCCACCTCCTCAGCCCCTGCAAACGACTACCCAGCTGCAATGGTCAGCTGTGGGTGGTCTGGAGGCCATTAAGACCACACCCATTGAAAGCACTCATCCCGCCACCACTACCTATTACATTCAAGCCAGTGATCTTTATGCTCAACAGGCCAATGTTAATCCTGCTCTGGAAACCTACACCATGCTGCCTCACAGTCAAATGGATACCAATGAGAACTATGTGTTGGAACAGGCTAATGCACAACCAACCGCACAGCAGCCCATTATGATACTAATACAACAGCCGGAACTGCAACAACCTGTGGCCTCGGCCAGTAATCCCCAGCAGGCACCCTTACACATCTACGGTGCACCCATCAGCAATGAGTTGCATCAACTCCAAAACCAAGTACAAAATCATACAGTATTACCCAGTCCCATGCCCGCCACCACACCCAAAGGTCGGGCGCTTTCGCTCAAGTGTCGCTTCTGTCAAAATGGACCACGTTTCTCGAATAGCCTCGAGTATAGTCGTCATATCATCGAATTGCATCCAGCGGTGGCCCCATTTAATTGTCCCCATTGTCCCTTGGCCTTTGCCGGGCGTAGTAAACGCTCTCAGCATATACTCAGCAATCATGTGGTCCAGCAATATCAGTGCGGTCAATGTACACAGGTGTTTCCGGCACAGCGAGCCTTGGATTTGCATATACAACGGTTTCATATGCCAGCCAGCGGAATAGGAAATGGTGGAGGAGGAGGCGGAGTCGGTGTACGTGTGGAAGAGGTACAATTGCAGATTGCAAATGAGCCACAGCCACAGTTGATCACACAGACAACGCCACAACAGCCAGCCCTGGAAATGCAAACAAATGCAAATGTGCCACGCAAGACTCGAATACTTTGTTGCCCGGACTGCGAGGATTGCCCCTCTGGAGTCCATCATGGTGGTGGTGGACCATTCGAAGAGTTAACCCATTTACAACCACCGCCTACAGTATTGACACCGCCCTCAACCATAGCCTCAGTGCCCTCACCACAGCCTCCCATGTGCAGTACACCACATATAACGCTACCCTCACCCGAACAATCGGAGCCAGATTCTACAACAACTTTGCGTCAGTTTCGCAAGCGTAATTGTACGGCTACACCTGTTGCTTCACCATCCCCTTCCTCGTCGCCTTCGTCATCCACCATGGCCGAACCCCAGACAACCCATCCAACTACAACACCCACCCCGCCCACCAGCAGCAGCAGCACCACCACCTCTGCTCTGCAAGTAAGCGAACTACGTGCAAGTCATCAGTGCATCTACTGTGAGGAGCGTTTTACCAATGACATTGCCCTGCGTAAGCATCATCAGCTGGCACACGGTGCACAGACGACCATGCCTTTTGTGTGTACCATATGCAAGCGTGGTTATCGCATGCGCACGGCACTGCATCGGCATATGGAATCCCATGATGCTGAGGGACGACCCTATGAATGCAATATATGTCGAGTGCGTTTCCCGCGACCCTCACAGCTGACGCTGCACAAGATCACCGTTCATCTGCTGTCCAAGCCGCACACCTGTGATGAGTGTGGCAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAGTTTCATGGTGAGCTTGGTTACCAATGCGAAGAATGCGATGAGTCATTCGCTTATATCAGAGATTTGCGCAAGCATCGACGCACTCACAATGGTCAACTATTTTACAAATGCGAACACTGTCCGCGCTCGTTCTTGCATTTTACGGGTTTTCATGCTCACATGAACTCTCATCTACCCTTGGGTGTGTTCCTGAACGAAGACTCCTCCATGATGACGACAACGAAATCCGAGCATTTAACCACAGAGCAACAGCCACTGACTCCCCTCAATCCGGATGAATCGCCCAGCTCAGTCGAAAGTAGCAGTGCAAATACAAATCTTCCTTTAGAAACAATTGCCACAACGCCATAA
Protein Sequence: MVCTRPDKSNHNCSISILNIIEGERDTILVHISLQRKMARGISRDDGLPQEICRQCKAQFLMVAKFRRKCVRMQQRLQDFAQEIADRQSEKLAKRQLQQQQHNDAYIHLPESQMERKRRLKPAIEVASHEQPAHPEPQPKHVKTEIEELPPPKVRRLQLRLHKLRASLTESLEQPAKIETACEKINLPWKTKAARKQLSENWSSEMEVEGRRSNSSSDLSVGPCCGFESGDSNLSSSSTSTQSKAELKYPKRGMMPRRGRRSRNAPVYTSAKRQKRTLQKKTPSDAKEMTENAKSDEVSFLVSFRKPQDITSSSENFIEVPLSNLDELSEQLYPAQQPDKTVSCLETSDEIPPNTSEKTTDSSSNEISVENKPNSSNEQPETFLNEKSTDILSTKSQNEEIKSTSNHICSKPEEDKTKEILFSTDNEIPLTNESTESSSDHQKSLPETTSNECSSKSEELPETSSYEIAHTNNSTENSVSENPSKKPRQTTCSTNETDEIPSSTQSEICCTVTSSTEPSEPTELIVSIPLEVLNDDLQRRLCVEGEVDPAQEQESAKEDDDVNNNANAENFCQSATADSFNAAVALPIPLEIEAKQETEIPLLVAETPPRIDDKKKEQENENMQEVEENEDQELPRVRTAPTPMDFLAEFEKHCELRTKTPSPPPSPTPPPPALNDLEAKQQLEVEMNDVESTLNGILNEMQDQHMYTPTCSHIDEFLTPADYAPLTEQEPPAPEQPTPAATNGRDLFDSNSFTNELIGFQNDIPCFENIEASPESHQNLQMELTQLLNELQPAAASASASQEPNLSSYESIPAYTSVDTAATWPPTPQQQQLPPPQPLQTTTQLQWSAVGGLEAIKTTPIESTHPATTTYYIQASDLYAQQANVNPALETYTMLPHSQMDTNENYVLEQANAQPTAQQPIMILIQQPELQQPVASASNPQQAPLHIYGAPISNELHQLQNQVQNHTVLPSPMPATTPKGRALSLKCRFCQNGPRFSNSLEYSRHIIELHPAVAPFNCPHCPLAFAGRSKRSQHILSNHVVQQYQCGQCTQVFPAQRALDLHIQRFHMPASGIGNGGGGGGVGVRVEEVQLQIANEPQPQLITQTTPQQPALEMQTNANVPRKTRILCCPDCEDCPSGVHHGGGGPFEELTHLQPPPTVLTPPSTIASVPSPQPPMCSTPHITLPSPEQSEPDSTTTLRQFRKRNCTATPVASPSPSSSPSSSTMAEPQTTHPTTTPTPPTSSSSTTTSALQVSELRASHQCIYCEERFTNDIALRKHHQLAHGAQTTMPFVCTICKRGYRMRTALHRHMESHDAEGRPYECNICRVRFPRPSQLTLHKITVHLLSKPHTCDECGKQFGTESALKTHIKFHGELGYQCEECDESFAYIRDLRKHRRTHNGQLFYKCEHCPRSFLHFTGFHAHMNSHLPLGVFLNEDSSMMTTTKSEHLTTEQQPLTPLNPDESPSSVESSSANTNLPLETIATTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00918632; iTF_00915807;
90% Identity: -
80% Identity: -