Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010000080.1:136421-138460[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0071 0.31 11.4 2.0 1 23 386 408 386 408 0.96

2 7 0.00016 0.007 16.6 0.8 1 23 414 437 414 437 0.98

3 7 0.01 0.45 10.9 0.7 1 23 443 466 443 466 0.94

4 7 4.7e-08 2e-06 27.7 1.7 1 23 491 513 491 513 0.99

5 7 6.1e-05 0.0026 17.9 0.6 1 23 519 542 519 542 0.97

6 7 0.01 0.44 10.9 1.5 1 23 549 571 549 571 0.98

7 7 0.0046 0.2 12.0 1.8 1 21 577 597 577 598 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0071	0.31	11.4	2.0	1	23	386	408	386	408	0.96
2	7	0.00016	0.007	16.6	0.8	1	23	414	437	414	437	0.98
3	7	0.01	0.45	10.9	0.7	1	23	443	466	443	466	0.94
4	7	4.7e-08	2e-06	27.7	1.7	1	23	491	513	491	513	0.99
5	7	6.1e-05	0.0026	17.9	0.6	1	23	519	542	519	542	0.97
6	7	0.01	0.44	10.9	1.5	1	23	549	571	549	571	0.98
7	7	0.0046	0.2	12.0	1.8	1	21	577	597	577	598	0.94

Sequence Information

Coding Sequence: ATGAAATGCTCGGTCTTCAACTGCAGGAACACAGTTCAGCGTTTAAGTTTCTTTAGCTTTCCCAAGTGTCCAAGGGTACGCAAAAAATGGCTAAGATTTTGCGAAAACAACAAAGTGCTGGACCAAAAGAATCCAGTTGTTTGCTCAATGCACTTCAACCCCAGGGATATCCAGAACAGCCGAATGTTCCAAATGGGATACGTCAACAGGCGAACCCTACGGACTGGAGCTGTGCCATGCATTAGGAATGAATTTTTTACAGATGCTGATGATGGCGATGCTGGTCCGGATGATTTGGAGTTTGCCGACTTTATAACCGTGGAGAAGGATCCCTTGACCATTGAGGAGTGTGTTGAACAGAAAAGCAATGATCAGTTGGTCAAGTGTCGCACATGTTTTGAAAATTTTGTGATCGATGACACGTCCGGGAATCTGGATGACCTCACTAGTAAAGTGCTTTTGTATCAAATTGAGGTGATAACAGGAATTTGGATCGATTGCCAAGATGATTTGCCACATCACATCTGTAGCCCATGTGTGGACTCTTTACGCCTAGCCATTGATTTTCGAGAGACTTGTCTACTTGCGCAACTGAAATTTAGGCAGTCTCTGGAAGTGGACTCTTTGGCCGCTGATGTGGTAGAGGCGGAAATCGAATTTGAAACTGAAATAGAAACAAAATCAGAAAAGAATATCTCAAATGCAGAATCCATACCCTTAATGGAAGAGCTTTCCTATATGTCATGGTCAGACTTTGGCCCTGAGTCCGAGGAATGGCCATCCCATTTGGTGGATTATCAAGATGATGAAGCAGAGCTTATAAGCGAAATCAAAGACGAAGAAGAAACTCTACCTGAACCTAAACCGGAACCTCATACAGCAAATCCTAAACCCACGGATGAGAAAAGTGTGTCTCTGTCATTGGGTCGCCAAATCTATAAAGAATACTTGAATGACAAAGAGTCGGCTAAACCCAAAACCAAACCCAATATGCAATATGATGAATATTTTCAAGACTGGGCAGTTGTACAGGAACCCAAAGAAAAAAAACCCAAACAAACGCCGCCCGCGAAACTTGTTTCCCAAGAACTCGCGGATAGAAGAAGAGATCAGAATCGCAAATATCGCGAGAAGCGCCTCAAAGATCCTCCCAGATTTATATGCGACCAATGCGGTATGAAATTTAGACTACAATGTGGCCTACGTGACCATTCACTTCGACACACCAACACCAAGAACTACACTTGCCCCAATTGCCCAAAGAAATTCTTTGATTCCTACAAGCGTAATATCCACGTACGTGTCGTACACAAGGGCGAGCGTCCATATGCCTGCAATTACTGCAGTGAAACCTATGTTTATCCCTATCAACGGCAGCAACACGAAAGTAAGGTGCATGGGGCAGCAAAGCGTATAAATTACCGTCCTATCAATCCCAAATCAGTCTGTAAGCGTACACTTGATAATCGTTACCAGTGTCACATTTGCGATAAAAGCTACGCAAACCAAAGTACTCTCAAATGGCATATAAATTCCCACACGGGTGACCGTCCTTACCAGTGCACGGTCTGCTCTAAGGGTTTCTTTAACCCAACTCTACTAAAACAGCACGAGAATTCGGTCCATAATATACGTAGACCGCCGTTTGAGTGTACTCAATGCCTAAAGGGATTCCATGTACGCAAAAAGCTTGAGGAACATCTACTGGTACACACCGGCGAGCGTCCCTATAGGTGCGAAGTATGCAATGTTACATTTAGATATAAACATAATATATATTCGCATAAAAAAATCTAA
Protein Sequence: MKCSVFNCRNTVQRLSFFSFPKCPRVRKKWLRFCENNKVLDQKNPVVCSMHFNPRDIQNSRMFQMGYVNRRTLRTGAVPCIRNEFFTDADDGDAGPDDLEFADFITVEKDPLTIEECVEQKSNDQLVKCRTCFENFVIDDTSGNLDDLTSKVLLYQIEVITGIWIDCQDDLPHHICSPCVDSLRLAIDFRETCLLAQLKFRQSLEVDSLAADVVEAEIEFETEIETKSEKNISNAESIPLMEELSYMSWSDFGPESEEWPSHLVDYQDDEAELISEIKDEEETLPEPKPEPHTANPKPTDEKSVSLSLGRQIYKEYLNDKESAKPKTKPNMQYDEYFQDWAVVQEPKEKKPKQTPPAKLVSQELADRRRDQNRKYREKRLKDPPRFICDQCGMKFRLQCGLRDHSLRHTNTKNYTCPNCPKKFFDSYKRNIHVRVVHKGERPYACNYCSETYVYPYQRQQHESKVHGAAKRINYRPINPKSVCKRTLDNRYQCHICDKSYANQSTLKWHINSHTGDRPYQCTVCSKGFFNPTLLKQHENSVHNIRRPPFECTQCLKGFHVRKKLEEHLLVHTGERPYRCEVCNVTFRYKHNIYSHKKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919851;
90% Identity: iTF_00919851;
80% Identity: iTF_00919851;