Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00026 0.011 15.9 0.1 2 22 184 204 183 204 0.95

2 6 0.095 4.1 7.9 0.1 2 23 214 235 213 235 0.96

3 6 3.9e-05 0.0017 18.5 3.4 2 23 242 263 241 263 0.96

4 6 0.00018 0.0079 16.4 0.4 1 23 269 291 269 291 0.98

5 6 0.00031 0.013 15.7 6.3 2 23 299 320 298 320 0.96

6 6 1.6e-07 7.1e-06 26.0 0.7 1 23 327 349 327 349 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00026	0.011	15.9	0.1	2	22	184	204	183	204	0.95
2	6	0.095	4.1	7.9	0.1	2	23	214	235	213	235	0.96
3	6	3.9e-05	0.0017	18.5	3.4	2	23	242	263	241	263	0.96
4	6	0.00018	0.0079	16.4	0.4	1	23	269	291	269	291	0.98
5	6	0.00031	0.013	15.7	6.3	2	23	299	320	298	320	0.96
6	6	1.6e-07	7.1e-06	26.0	0.7	1	23	327	349	327	349	0.98

Coding Sequence: ATGAGTTCGACTCGTCCGCATTGTTTTGTCTGCGGCAAAGTAAAAAATGTTGGAGTATTTCAGCTTATCGAAGGCTGCATTGTGCCGGGAACTTTCAAGCCGATTAAGGACATACTCAAATACTTTGAAAAAATTATTAATCAACGTTTGGAATTGAGACCCAACTCAGCCGCATGCAGAGATTGCTTAGAGTATCTCTTTAACTACGATCGGCTTGTTAGAAACCTCAGTCAAGTGCAGCGTCAAATTGCCGATGCTTTGCTAAGTTGCCGCAAACAGAAACCCGGCATCAAGGCAACGCCCAAAAAAGAAATAGTCAAGGCCAAAATGCCGTCTCCACAATTCAAGATCATTGACAATTCTCCCAAGAAACGAAGTGTGGAAGTCCTATCGCCACCACCTCCAACGGAGACCGTGAAAATCGAAGAATTCCAAGCCATTACCATGGATGACGAGCCCCAAGACGATTTTGTGTTCAGCGATGCCATGGACGATAACGAGAGCCTGGAGTCATCCGATTCAGAGACCGACTTCGAGCAGCTAGAGGTTCCTTGTCACATATGCGGCGTAATGTTCTCCAGTCAAGAGATTCTCGAGCGGCACATCAAAACGGACAATTGTCAGAAGAATGAGTATTCTACCTGTAACGTGTGCGGCCTCAAGGTCAAGGACGATGAAGTTCTGGACTTGCACATGAATCTGCATGAGGGGAAAACCGAACTGGAGTGCCGCTATTGTTCCAAAAAGTTTACACACAAGCGAAACGTTCTACGTCACATGGAGGTGCATTGGGACAAAAAGAAATATCAGTGCGATAAATGTGGCGAGCGTTTCTCCTTGTCGTGGCTAATGTACAATCATCTCATGCTACACGATGCGGAGGAAAATGCACTGATCTGTGAGGTGTGCCATCAGCAATTCAAAACGAAACGAACCTACAAGCACCACCTACGCACCCATCAGACAGATCGGCCGCGTTATCCATGCACCGAGTGCGAGAAATCCTTTGTGGACAAGTATACGTTAAAGGTGCACAGGCGCGTACATGGACCGGTGGAACAGCTTGCCCAAGCCATATCGGAATAA
Protein Sequence: MSSTRPHCFVCGKVKNVGVFQLIEGCIVPGTFKPIKDILKYFEKIINQRLELRPNSAACRDCLEYLFNYDRLVRNLSQVQRQIADALLSCRKQKPGIKATPKKEIVKAKMPSPQFKIIDNSPKKRSVEVLSPPPPTETVKIEEFQAITMDDEPQDDFVFSDAMDDNESLESSDSETDFEQLEVPCHICGVMFSSQEILERHIKTDNCQKNEYSTCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCSKKFTHKRNVLRHMEVHWDKKKYQCDKCGERFSLSWLMYNHLMLHDAEENALICEVCHQQFKTKRTYKHHLRTHQTDRPRYPCTECEKSFVDKYTLKVHRRVHGPVEQLAQAISE

Sequence clustering based on sequence similarity using MMseqs2