Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010001745.1:31497-39375[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0013 0.058 13.7 0.7 1 23 502 524 502 524 0.99

2 7 0.0056 0.24 11.7 1.8 1 23 532 554 532 554 0.97

3 7 0.00033 0.015 15.6 1.0 1 23 563 585 563 585 0.98

4 7 5.4e-06 0.00023 21.2 1.1 1 23 647 669 647 669 0.97

5 7 0.00097 0.042 14.1 1.0 1 23 677 701 677 701 0.98

6 7 2.6e-07 1.1e-05 25.4 2.1 1 23 707 729 707 729 0.98

7 7 0.00032 0.014 15.6 0.1 1 23 735 757 735 757 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0013	0.058	13.7	0.7	1	23	502	524	502	524	0.99
2	7	0.0056	0.24	11.7	1.8	1	23	532	554	532	554	0.97
3	7	0.00033	0.015	15.6	1.0	1	23	563	585	563	585	0.98
4	7	5.4e-06	0.00023	21.2	1.1	1	23	647	669	647	669	0.97
5	7	0.00097	0.042	14.1	1.0	1	23	677	701	677	701	0.98
6	7	2.6e-07	1.1e-05	25.4	2.1	1	23	707	729	707	729	0.98
7	7	0.00032	0.014	15.6	0.1	1	23	735	757	735	757	0.98

Sequence Information

Coding Sequence: ATGAGCGTGTTGGCATATCCACGTACAAACGATGAGGAGATTTTTCGCCACTGCACAAAGGACTGCGGCGTGGTGACGGCCACCGAGGACTTTCAGTATTTTGCCCTCCGCTGCATATTCTGCAGTGAAAAGTTTCTCTACTTTGATTCATTTATTGGACACATGCAGACCATGCATCTGACCGAGGGCGGCGGTGGCTCGGTAGTGAGGGCAGGAGCAGCTGAAGCATTGGGCTTCAGTTTGGGCGAGCCCATGTCCCTGTCCATGGACGATGAGGCCATGGGACCGCATGTGGGTGGCAGTCATGGTAATGGTAGAAATTTTGATGAGATTGAAGACTTGACCGACGCAGACACAGCTCTGCTGGAGCCACAAATGGTGATCAAGCAAGAGCTGCACGAATTGGGCAGCAGCGACGATGAACAGGTGGTGCCCGAGGTGGAGCAGCGTCTGCGCTTGCCCGTCAGTGTGAATCTGGACGACGACGACGACGACGATGATGATGAAGAAGATGACGATGATGAAGCCATCTTGCCGGAAGCCACCAGCACACAAGTGCGTCCTCGCATGAAGGTCACCGTACCACGACAGCGCCAGCAAATGGATGTGAAGAACGAACCACTCAATGCCGATGGCGACTCCTCCATGGATGAATACGGCTATATGGATGATCAGGACAATGACAATTCCGGCGAATATATGGACTTTAACAGCTACAGTGCAGGGGCCCAATTGAATCACAGCATTCTGGGCGGCGAAACAGATTTCTTGAGCTACGATGAAATGGTCGAGGAATCGCTGCTGGGTCGCGATCGCGAGCTTACCATGCACATCAAGGACCGCAAAATGATTCAATTCCTGATCCATTCATATCAGCGAAACCCCTTTCTCTGGGATCACAGTCACGCCCAGTTCAGGGATCGTGTAAAGCGTGCCCGTTTCCTGGACTGGATTGTGCTCGAGTTCAAGAGCCGCTTCAACATATCCCTGGCCAAAGATGCCATTACCCGCAAATGGGATAACCTACGCACCGTCTACAAACGCGAATGCAATCGCATGGCCCTGGAGAAGACAAACATAAGTACATTGTGGTACTTTAAGGAGCTGCATTTCCTCAACGAGGTCTACAGCTACAACTCGAAAATGTCGGATGCGGTGGTCAAGGAAACCTCATATCGTCGCCGCTTCTCGGCCATTTGGAATGACACCTCGACAGCGAAATTACTCAGCATGGTGAAACGCTATCAATGTTTCTACAATCGCTTCGATCCCGATTATCGCAGCAAGGAGCGACGCGGCGAGGGTCTCCATCAGATGGCCGTCGAGCTGCAGCAAATGATTGATGTGACCACCATTCAGATCTCGAAGCGCATTTCTCAGTTGCGTTTCGATTACTCCAAACAGAAGATGGAACGCCTGAACTGTGAGCGGTTGGGCCGCAAGTTTATACCGAACTACATTTACTATGACCAGATGAATTTCATGGATGACGACATCCCGCCCTTCAAGTGCCAGCATTGCGGTGAGATTGTGCAAACGTTGCGCGAACTGGACCTACACATGCTCACCCATCAGCCCAGCCTGGGCGGGGGCTACTATTGCAATGTGTGCAACATTCAGTTCCACAATGCGGAGGAGTTCGAGACGCACAAACAGTTGCACTTGGGCGGCGGCAATGAGGTGAAGTACAACTGTGAATTGTGCACGGCCAGTTTCCGGGAGAAGTCCAACTATGATGAGCATTTGCGTCGTCACAACGAGGAGCTGTTTTTGCCCTCGTTGGCGCTCAATCATAGCATACTGGAGGGCAGTGAGACAGGCGGAAATGATAACAGCGGCGAGGGAGCAGGCGGTGATGGCGACGGTAAAGTGGAAGGAATCGGTTCGGCAGACGACGACGAAGACGATCAGCTGCTGACGCCCGAGGGCGGCAAACCCTTCCCCTGTGACACTTGTCATCGCACTTTCGCCACACCCGGCCATCTGAATGCCCATCGCATAGTGCATCAGGATGAGCGCGAACGCTGCTACAAGTGCGACTATCCGCAGTGCAATAAATCGTTTGTGGCCCGCAACAGCCTCTTCGAGCATCTCAAGCAGCACTACAGCAACGAGGAGTTCAAGTGCGACATTTGTGGCAAAAGTTTCAAGTCTACGAAGAATCTACAGAATCATAAGCAAATCCATGACAAGGTCAAACGTTACGTATGCCAAATATGTGGCTCAGCATTTGCCCAGGCAGCGGGTCTCTATCTGCACAAGCGTCGGCACAATCGTCCGAATGGTACCACCGGGGCGGTGGGTCGCTCCAATCGTACCAGTCTGTGA
Protein Sequence: MSVLAYPRTNDEEIFRHCTKDCGVVTATEDFQYFALRCIFCSEKFLYFDSFIGHMQTMHLTEGGGGSVVRAGAAEALGFSLGEPMSLSMDDEAMGPHVGGSHGNGRNFDEIEDLTDADTALLEPQMVIKQELHELGSSDDEQVVPEVEQRLRLPVSVNLDDDDDDDDDEEDDDDEAILPEATSTQVRPRMKVTVPRQRQQMDVKNEPLNADGDSSMDEYGYMDDQDNDNSGEYMDFNSYSAGAQLNHSILGGETDFLSYDEMVEESLLGRDRELTMHIKDRKMIQFLIHSYQRNPFLWDHSHAQFRDRVKRARFLDWIVLEFKSRFNISLAKDAITRKWDNLRTVYKRECNRMALEKTNISTLWYFKELHFLNEVYSYNSKMSDAVVKETSYRRRFSAIWNDTSTAKLLSMVKRYQCFYNRFDPDYRSKERRGEGLHQMAVELQQMIDVTTIQISKRISQLRFDYSKQKMERLNCERLGRKFIPNYIYYDQMNFMDDDIPPFKCQHCGEIVQTLRELDLHMLTHQPSLGGGYYCNVCNIQFHNAEEFETHKQLHLGGGNEVKYNCELCTASFREKSNYDEHLRRHNEELFLPSLALNHSILEGSETGGNDNSGEGAGGDGDGKVEGIGSADDDEDDQLLTPEGGKPFPCDTCHRTFATPGHLNAHRIVHQDERERCYKCDYPQCNKSFVARNSLFEHLKQHYSNEEFKCDICGKSFKSTKNLQNHKQIHDKVKRYVCQICGSAFAQAAGLYLHKRRHNRPNGTTGAVGRSNRTSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919359;
90% Identity: iTF_00919359;
80% Identity: -