Lsta000194.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- ken1
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010000032.1:228902-231071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.31 13 6.3 9.9 2 23 185 206 184 206 0.96 2 10 0.0004 0.017 15.4 0.1 1 23 212 237 212 237 0.93 3 10 0.014 0.61 10.5 0.1 3 23 246 269 244 269 0.93 4 10 0.00034 0.015 15.6 0.8 2 23 283 304 282 304 0.96 5 10 1.2e-05 0.00053 20.1 0.6 1 23 311 333 311 333 0.98 6 10 0.0031 0.13 12.6 0.2 1 23 339 361 339 361 0.98 7 10 0.095 4.1 7.9 1.4 1 23 367 390 367 390 0.97 8 10 0.013 0.57 10.6 4.0 1 23 396 418 396 418 0.96 9 10 0.0011 0.048 14.0 2.9 2 23 425 446 424 446 0.96 10 10 1.1e-05 0.00048 20.2 0.9 1 23 522 544 522 544 0.98
Sequence Information
- Coding Sequence
- ATGAGTGAGTCTATTCACTCAGTGTGCCGCATTTGCTTAATATACCTTGGCCACAGTCCTAACTTTACTCATGACCTGTTTCAAAAGCCCGATTTGGCTGAGATGCTGACAATGTGCACGGGGGTGCGGGTGGAGCCAAAGGATGGATTTCCAAAATATCTGTGTGGCAGTTGCTATAACCGGTTGGATGATATGCACGAGTTTCAGAAAATGTGCGTGGACTCTGTGCAAAAGTTCCAGGAGATGTTGGCCCAGAATATGTTCACTTGTCACACCGTCACCTCAACCAGCTTTGATGTACTGAATGTGGTCAGTAATGAGGGCGATGTCGAGGGAGTATTGGCAGGTGCCGCAGAGGAAGATCGCATCAATTTTGATCCTTTACTGAATCATAAAATGGAAATGATCGAGAACGAAGAGGAAGTGATCAAAATGCTGGAGACGGTGGACAAGGAGCAGAGCTCTAGCGATGATGATTTGCCTTTGGCGCAGCGCTGGGAGGAGGAGCAGCAGCAGCGTTCGAAACCGAGAAGAAGGCTGGCCACCCTACTCACCTGTCACATTTGCCAGAAAAAGTTCAAAATGCGTTGCAAGTTCGATGAGCATATGAAGCATCACAATGAACTCCTGCCCTTTCAGTGCCCGGAAGACTCCTGCAAGAAGGGCTTTACCACTGCATCAGCGCTTCGTCTCCACGTGGACTATGCGCATACGAAGCAGTCCGCAGAGATTCCATGCAGCGTAGATGGTTGCAAGTTGGTTTTCCCTCGCGTGCGTCTGCTCACTATACACCTGAAGAAAGTGCACAATTTGAACCGTCCGAGTGGTGGCCCTCGATTGAAACAACCCTGCAGCGAATGTGGCATGGTTTTTCGCTGTCCCGGGGCACTCAAGAAGCACATGTATAAGCATACAGGCAAAGAGTTGCCCTATCCGTGCAACATTTGTGGGAAAGGATTTCACATTAATAGCGCCCTTAAGAATCATTTGCTGCGGCACGCGGGCATCAAGAACTACGTGTGTCCCTATTGTGGTGTGGGCAAAACGACGCGGCAGGAGTGGAGTAAGCACATGCTCACCCACACCCAGGAGAAGCAGTTCAAGTGTGAGATCTGTGCACATGCTACGCATACGAAACGAGCACTGGACAATCATGTCAAAATTGTGCACGAGAAGGTTCGCAACTTTGCCTGTCAATATTGTGGCAAAACCTTTGGCAAATCACATGCCTGTAAAATCCACGAGATGACACACACGGGAGAGAAGCGTTGCGAGTGCAAGGTGTGTGGTAAAAAGTTTCTCTACACAGAGAGCCTGACCAAACATTTGAAAATCCATGAGAAAAGTGTTGAAAGATCTTTGGAAACCTATCGCCAAAGGCAGGGCCAGTCGGGTCTGACCGATATTCCGCAAGCGGATGCCACCGATCATTTGCTGAAGGTCTGTGCCGAGTCGGTGGCCACCATACCACGAGATCCTCGACGCGTTGAACGCGTGGATATATCCAAATTGGCGGGCACTTCTCTCAAGCAACACGAATGGATTCACACCGGAGAGAAGCCGTATGCCTGTAAAACTTGTGGTAATCATTTTCGCCAAGAGGCGGCTCTAATCCGACATCAGAGAGTGCATGACGAGAAGCCGCCGAAGCCAGTCAAAGCGCCCAAAGAGATAACGGAAAAAGTGCGCGAAAAGAAATTGCAGAAGGACGAACGAAGACGTCAAGTGGAGGCATTGCGTCAGGAAATAGCCGAGGTGGCCAAAGAAGAGCTGAAGGATTTGGCCAAGCAGAAAGCTCTGGAAAAGCAACAGAACACCTATGAACAATATCAGGCAGCGGCCGAGGAAGCGGGTCATTCGAAATTAAGAGATATAACCATGAGGAGGCCTTTATAA
- Protein Sequence
- MSESIHSVCRICLIYLGHSPNFTHDLFQKPDLAEMLTMCTGVRVEPKDGFPKYLCGSCYNRLDDMHEFQKMCVDSVQKFQEMLAQNMFTCHTVTSTSFDVLNVVSNEGDVEGVLAGAAEEDRINFDPLLNHKMEMIENEEEVIKMLETVDKEQSSSDDDLPLAQRWEEEQQQRSKPRRRLATLLTCHICQKKFKMRCKFDEHMKHHNELLPFQCPEDSCKKGFTTASALRLHVDYAHTKQSAEIPCSVDGCKLVFPRVRLLTIHLKKVHNLNRPSGGPRLKQPCSECGMVFRCPGALKKHMYKHTGKELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHMLTHTQEKQFKCEICAHATHTKRALDNHVKIVHEKVRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVERSLETYRQRQGQSGLTDIPQADATDHLLKVCAESVATIPRDPRRVERVDISKLAGTSLKQHEWIHTGEKPYACKTCGNHFRQEAALIRHQRVHDEKPPKPVKAPKEITEKVREKKLQKDERRRQVEALRQEIAEVAKEELKDLAKQKALEKQQNTYEQYQAAAEEAGHSKLRDITMRRPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916569;
- 90% Identity
- -
- 80% Identity
- -