Lsta002094.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- Znf574
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010001322.1:39447-41563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.9 3.4e+02 1.8 0.3 1 14 49 62 49 66 0.80 2 11 0.047 2 8.8 0.5 1 23 297 320 297 320 0.97 3 11 0.2 8.6 6.9 0.1 6 23 330 347 330 347 0.98 4 11 7.2e-05 0.0031 17.7 1.1 1 23 353 375 353 375 0.98 5 11 0.00016 0.0071 16.6 0.8 1 23 386 409 386 409 0.93 6 11 1.7e-05 0.00072 19.7 2.2 1 23 417 440 417 440 0.98 7 11 9.5e-05 0.0041 17.3 1.4 3 23 448 469 446 469 0.94 8 11 0.016 0.68 10.3 0.2 2 23 481 503 480 503 0.96 9 11 9.8e-05 0.0042 17.3 4.1 1 23 510 533 510 533 0.93 10 11 4.2e-06 0.00018 21.6 2.1 1 23 539 561 539 561 0.98 11 11 0.13 5.7 7.4 5.0 1 23 567 590 567 590 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCCTGTGTGCTTTGTTTTGATTGCTGCAGTGCGGCTTTAGGCTTGAATTCACCTGAAGGAGCGCAACTCGACATACGCGGAATCATAAACAAACATTTGGTTTTCTTTGAGTCGCCGGAGTCTCCCGACACCTGTGAATTCATTTGCCAGGACTGCTGGCAGAGCTTAAGATCCTTCAATGAATTCCATCAAAGAGTCTTTCAATTGCACCAGCAACGTCGTGTGGGTGAAAAAAGTCTGGCCATTGAGTTCTGTGGCGAGATTGAAGCCGTAAATCCACTGGCCGAGAGCGTCTTTGCTCCCAGTGAAGTCAAAGTGGAAGTAAATGAGCTAGAACCCTTACCCAAGGTCGAGCTTTTGGAGGATCCTGTTAAAACGGAAACTACCAAGGAAAAAGCCAGTACCAAGCGCAAGATTAAGAAAGAGCAATTACCAGCCAGCGATTCAGATGGCGATAGACCTCTGGCTGATTTCTTGAGCTCTCCTCCCGCTGCCGTACCAGTACGACGTAGCACTCGTCGCGGTCGTCCACGCAAAATTCTTAAAGAAACTCCACCCTCGCCCACTCCGCTCAAACAGGAATTCGATTCGGATGATGATCATGACGTGGACTTTGTGGCAGCTGAAGCTGTCTTGGGCACCGATGACAGCGCCAGCTCCTCTTCCAGTGAGAGCAACAATGATGATGCCGATTCCCTGCCTGATATTGAGCCCGAGGAGCAGTATGCCGAGATACCCAAGCGGGTGATCGTTAAGCCCAAAAAATATCGCAAGCGACCCAAACCTTTGGTGGAGCCCGTGCGTATGAGTCGCGATGCCATTGAAAAGCGCAAACAACAGCAAACGGAATACGACGAGATTATCCAGAAATTCTTCAAGAAGTTCCCCTGTGATAAGTGCAATCTGTTGGTGCAGAACTTTGCCGATATGCGACGACACCAGCGCATGTCCCACAACATTGAGTCCTGCTACATCATTTGCTGCGGTAAGAAGTTTTATTTACGTAAAGCATTGGCGGAACATGTTTTGGTACATCAGAATCCGGATCATTTTAAGTGTTCGGAGTGCGGACGAGTGTGCCAAGACTCGCGCTCTCTGGAAGCGCATGAGCAGTCCCATTCGGAGGCAGCCACCAAGGAGAAGCCCATTTTTCAGTGTGAAAAGTGCCCCAAGAGTTTCACTACCAAAGAGGGCATTGAATATCACGAGTTGTCCAAGCATGTGCCCAAATCTGAGTATAAATTCACTTGTCCCGAGTGCAATAAGAAAATCCCCACAAAGCGCCATCTAAAGGAGCACTTGCGCAAAGTCCATGATCCGGAGAAGGCCATCATTTGCGACAAATGCGGCAAGACTTTGCGTTCCCAAACGTATCTCAAGAAGCACCACGAGGTCGAACATTCCGAAACACCACGAGTTAAACCTGATCCCGTGCAGTGCGAAATCTGTGGCACTTGGCTAAGTCATATGTCCGGCCTAAAGCTGCATATGAATTCCGTACACGAGGAATCGGGAGTTGAGCATCGTTGTCCCATTTGCAATAAGACTTCCACCAATTCCCGTGCCCTCAAACGTCACATTTATCATAATCATGAGTGCGAACGCAAGTTCAAGTGTGGCATGTGCGAGAAGGCCTTCAAGCGGCCACACGACTTAAGGGAGCACACCTCCACTCACACAGGAGAAGTACTGTACACCTGTCCCAACTGTCCCATGACCTTCTTCTGCAATGCAAATATGCATAAACATCGTCAGCGCTTGCATCGTGCCGAATGGGAAGCGGATAGGAAAAAACCTTTGCCACCCCATTTGCGAAAAACCTCCCAGGAACCTGCCAACACAGCCATGAAGAAGCGTCTGGCTACTTTCTATACAGCAGCACAGGCGGCTCCCACAGACTTTTCGCTTGCCCAACAGCATTTGTAA
- Protein Sequence
- MEACVLCFDCCSAALGLNSPEGAQLDIRGIINKHLVFFESPESPDTCEFICQDCWQSLRSFNEFHQRVFQLHQQRRVGEKSLAIEFCGEIEAVNPLAESVFAPSEVKVEVNELEPLPKVELLEDPVKTETTKEKASTKRKIKKEQLPASDSDGDRPLADFLSSPPAAVPVRRSTRRGRPRKILKETPPSPTPLKQEFDSDDDHDVDFVAAEAVLGTDDSASSSSSESNNDDADSLPDIEPEEQYAEIPKRVIVKPKKYRKRPKPLVEPVRMSRDAIEKRKQQQTEYDEIIQKFFKKFPCDKCNLLVQNFADMRRHQRMSHNIESCYIICCGKKFYLRKALAEHVLVHQNPDHFKCSECGRVCQDSRSLEAHEQSHSEAATKEKPIFQCEKCPKSFTTKEGIEYHELSKHVPKSEYKFTCPECNKKIPTKRHLKEHLRKVHDPEKAIICDKCGKTLRSQTYLKKHHEVEHSETPRVKPDPVQCEICGTWLSHMSGLKLHMNSVHEESGVEHRCPICNKTSTNSRALKRHIYHNHECERKFKCGMCEKAFKRPHDLREHTSTHTGEVLYTCPNCPMTFFCNANMHKHRQRLHRAEWEADRKKPLPPHLRKTSQEPANTAMKKRLATFYTAAQAAPTDFSLAQQHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914786;
- 90% Identity
- iTF_00918448;
- 80% Identity
- -