Lsta002943.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010004449.1:3509-4795[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.001 0.044 14.1 6.5 1 23 150 173 150 173 0.98 2 9 0.00014 0.0062 16.8 0.5 1 23 180 203 180 203 0.96 3 9 0.018 0.78 10.1 0.2 1 23 210 235 210 235 0.91 4 9 1.4e-06 6.2e-05 23.1 0.9 1 23 248 271 248 271 0.97 5 9 0.035 1.5 9.2 7.0 1 23 288 311 288 311 0.94 6 9 0.0018 0.079 13.3 1.4 1 23 320 342 320 342 0.97 7 9 5.1e-06 0.00022 21.3 0.2 2 23 348 370 347 370 0.95 8 9 0.0015 0.064 13.5 5.3 1 23 376 398 376 398 0.95 9 9 1e-05 0.00045 20.3 2.6 3 23 406 426 404 426 0.97
Sequence Information
- Coding Sequence
- ATGCAAACTTTAACCAAAGAGACGGCCCCACAACATTGTCTCACCTGCCTTCTAAAGGTGGACCAAGAAGGCTTAGAATCTGGCCGCCTTAGTTTAGAACTGCGTCACTTACTTTCATTACATTTGGATTGGACGCTGGAGGATGAGCAGGATTTGGAACCCTGGTATCCCCAGCAGCTATGCCTGGAGTGTCGACATATATTGGAGAATTTCTCTAGATTTAAGCAACTTGCTTACGAATCCCGCCAAAAGCTGCAGTCTCTGTTTCAAGTCACAGAAGAGCTGGAGCAGCCCACTTTTGAAGTGGTCTATGAAGAGCCCACCTCCGCCAGCCCCGAACCCAGCGATCCAGATCCCTTTGACAAAGATGAAGATCAGGCGGCAGAGGAGCAGCAGCAGCAGCAACAGAAGAAATCACTTAAAAGAAAATCCCCCAAGGGCATGAGTTTCAAATGCCATTTATGTCGTCACAGTTTTGCCCACAAGCTCACCCTCTCCGCCCACATACGCAAGGTGCATGAGGGCAGCAAGCGTCCCTTTCAGTGTGATCAGTGCGACAAGTCATACAGCTTTATGGGCGGTCTTTATACCCACATCAAGGAGATTCATCAGCCGCAAGTGCGACGCTATCTCTGCAATGAGGCTGGCTGTGAACGCGTCTACACCAGCTCCATAGCCATGCAGCGACACAAACAGCTCAAGCACAACACCAGCTCCTCACCCCGAGAACCGTCCAAAAAGTTTATATGCGAACAATGCGGCGCCTCGTTCAATCAGTCTGCGAATCTCAAATACCATCGACGCACCAAACATCCCACCGAACAGGAGATGGCCGCCGCCCAGAATGGCCATGCAGAGCAGCATTACTGTGAGCTCTGCCAAAAGAATTTCCATTCCCGTTATACGCTCAAATATCATACAATGCAACAACACGGCGACCAGGAGGCACTTCTGCCACATGAATGCCAAATCTGTGGACGTCGCATGGCCAAGAAATTTATGCTACTGCAGCATATGCTGATGCATTCCCGCGACAAAATGCCCTGTGAGCATTGTGGCAAACTGTTTGCACGTAAATTTGAACTGGAGGCACACATCCGGGCGGTGCATCTCAAGCTGAAACCGTTTGCCTGCAAATATTGCTCGGAATGTTTTGCATCGAGGAAAACGTTGCGTCATCATGAGTACATACACACAGGAGAGAAGCCCTATGGATGTGATATATGCGGACAATCGTTCAGGCAACAGACTTGCCTCAAGAATCATCGCAAAGTTCATGAGAAGTGA
- Protein Sequence
- MQTLTKETAPQHCLTCLLKVDQEGLESGRLSLELRHLLSLHLDWTLEDEQDLEPWYPQQLCLECRHILENFSRFKQLAYESRQKLQSLFQVTEELEQPTFEVVYEEPTSASPEPSDPDPFDKDEDQAAEEQQQQQQKKSLKRKSPKGMSFKCHLCRHSFAHKLTLSAHIRKVHEGSKRPFQCDQCDKSYSFMGGLYTHIKEIHQPQVRRYLCNEAGCERVYTSSIAMQRHKQLKHNTSSSPREPSKKFICEQCGASFNQSANLKYHRRTKHPTEQEMAAAQNGHAEQHYCELCQKNFHSRYTLKYHTMQQHGDQEALLPHECQICGRRMAKKFMLLQHMLMHSRDKMPCEHCGKLFARKFELEAHIRAVHLKLKPFACKYCSECFASRKTLRHHEYIHTGEKPYGCDICGQSFRQQTCLKNHRKVHEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919303;
- 90% Identity
- iTF_00916550;
- 80% Identity
- -