Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010000033.1:207445-215678[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.3e-06 0.0001 22.4 0.7 1 23 219 242 219 242 0.98

2 8 1.2e-05 0.00052 20.1 2.0 1 23 252 274 252 274 0.97

3 8 0.00064 0.028 14.7 0.4 1 23 283 306 283 306 0.94

4 8 0.013 0.57 10.6 0.1 3 23 316 336 314 336 0.97

5 8 6.6e-05 0.0029 17.8 4.7 1 23 342 364 342 364 0.98

6 8 9.4e-05 0.0041 17.3 0.1 1 23 369 391 369 391 0.98

7 8 2.6e-06 0.00011 22.2 1.7 1 23 397 419 397 419 0.97

8 8 0.017 0.76 10.2 4.0 1 23 425 448 425 448 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.3e-06	0.0001	22.4	0.7	1	23	219	242	219	242	0.98
2	8	1.2e-05	0.00052	20.1	2.0	1	23	252	274	252	274	0.97
3	8	0.00064	0.028	14.7	0.4	1	23	283	306	283	306	0.94
4	8	0.013	0.57	10.6	0.1	3	23	316	336	314	336	0.97
5	8	6.6e-05	0.0029	17.8	4.7	1	23	342	364	342	364	0.98
6	8	9.4e-05	0.0041	17.3	0.1	1	23	369	391	369	391	0.98
7	8	2.6e-06	0.00011	22.2	1.7	1	23	397	419	397	419	0.97
8	8	0.017	0.76	10.2	4.0	1	23	425	448	425	448	0.97

Sequence Information

Coding Sequence: ATGACTTCAACTGACTGGCATCTGTGGTGTCGTCTGTGCGCCAAAGATGACGTGCAGGGCAACATCAACGTCTTCCTTAAGAATGAGGAACAGACCACAGCTGCTAGTATCGGTGGGGCCCCAGCTGGCGGAGGAGGAGATCTGGCATTAGCCACAGCCATTGGCAGATATTTCTGGGTGAATATAAGCCGAGGTGAGGAGTTGCCGGAGATGATTTGCACTGAATGTTTAACTCTGGTCACGTCGCTGGTCAACTTCTCTGAGAGAATAACCCGAGTGCAGAAACTGTATAGTAAATTACAAAGCAGCAAGCAGGATGAGGAGGACTTAAATCTGAAGGAGTTGAGAATTAGATTTGGCTTGCTTGAGGAGGAAGAGCAGGTGGAGCTGGATACTCTAACCGAGGTGCACTATGTAGACGAGAAACCCAAAATAATTCACGAAGAAGCGGAAGAAATGGATACAGAGTTTGGGTTTGAATTGGAAAATCCGCTAAATGAATCAGAGGAAGAGGAGGAGGAGCCAGAAACTGTACAGCAAGAAGTACTACAGCTTTGTGAGGCCTTTGCCCTCAATGAGGAACAAGAGGATGAGGATGAGGATGTCCATATTTCTCCCAAAACCAATCTCCGCCAGCAAAAACGTGATAAATCCCATCAATGTTCCGAATGCCCACGTGTCTATGCCACCGCGAATACTCTCAGTCGGCACATGCGTATGGATCATGGCCAATTGGAGGAACCTAGCCCACAATTCTCCTGCCCTGAGTGTTCAAAGAAATTTCATTCCCCCTGGAATCTCAAACGACATGCCCAACAACATCAGCCCCTGCCTAAACGCAAAATTTATCCCTGTTCCAGTTGTGACAAAATGTTCACCACCAGCGCCTCCGCCACACAGCATGCCCAATATATGCATCAGGAAGAACGACCTCGTCCTGTCATCTGCGAGCAATGTGGAGTCTCTGTTCACTCATTGGGAGCACTTAAAGAGCACATCCTTAAGCACACCGATGATGCACCATTCGAGTGTGATGTGTGCAAGAAATGCTTCAAGTCCTCGAGACGTCTCAAGCTTCACCAGGAGACACATGATCCGCATAAATATGTTTGCCCCGAGTGTGGAATGCAATTGAATTCGAAACCCACCTTAAACCGCCATCGATTGGTGCACACCGATCAAATGCAGCACAAATGCGACTATTGTGGACGGGAATTTAAACGAGCGAAGGCGCTAAAGAACCATTTGATACTCCATACGGGACTGAAGCCATATTCATGCGATTTCTGTGATCGCACCTTTGCCAATGGCTCAAATTGCCGTACGCACAAGAAGAAGGTACATCCAGAGGAATTGGCCGCTCAGGAGGCGGCTGGTGGGGCAAAGACCTATAATCGAAATATACCCAAACTGGACGCGCTTAGGGCATTCACCAAAAATAAGGACAACCTGTCACCGGTGGCCACCAAGCAGAGTGGTTGCTTTGCCTTTGGCAAAAAGCCGAAGCCATTGGTTAAAACCGATGTTAATGTTCCGCACATGGTAGTGATGGTGCCCGAAACCACTCCACCGGCCGCATCCTCGAACATACCCACCATAGACAATATATACAATCACATATTGAAACAATCTCCACCCACTACCAAATCGGAAGCCAACCAACCAACATCATATGTGATGCAGCCACAACAGCAGTTGGTGATCTTAAGTGATAGTGATGGCAGCGCCACACTAGCCACGAGCACTAGCAGCAGCGGACAGGCCATACAGGATGAGCAACTGGAGTCCAGTGGGGGCTCGACTCAGGTCTTTTCATATTGA
Protein Sequence: MTSTDWHLWCRLCAKDDVQGNINVFLKNEEQTTAASIGGAPAGGGGDLALATAIGRYFWVNISRGEELPEMICTECLTLVTSLVNFSERITRVQKLYSKLQSSKQDEEDLNLKELRIRFGLLEEEEQVELDTLTEVHYVDEKPKIIHEEAEEMDTEFGFELENPLNESEEEEEEPETVQQEVLQLCEAFALNEEQEDEDEDVHISPKTNLRQQKRDKSHQCSECPRVYATANTLSRHMRMDHGQLEEPSPQFSCPECSKKFHSPWNLKRHAQQHQPLPKRKIYPCSSCDKMFTTSASATQHAQYMHQEERPRPVICEQCGVSVHSLGALKEHILKHTDDAPFECDVCKKCFKSSRRLKLHQETHDPHKYVCPECGMQLNSKPTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDFCDRTFANGSNCRTHKKKVHPEELAAQEAAGGAKTYNRNIPKLDALRAFTKNKDNLSPVATKQSGCFAFGKKPKPLVKTDVNVPHMVVMVPETTPPAASSNIPTIDNIYNHILKQSPPTTKSEANQPTSYVMQPQQQLVILSDSDGSATLATSTSSSGQAIQDEQLESSGGSTQVFSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919314;
90% Identity: iTF_00915605;
80% Identity: -