Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010002342.1:10577-18685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2 86 3.7 0.2 5 20 489 504 488 506 0.92

2 9 9.2e-05 0.004 17.3 0.9 1 23 589 611 589 611 0.97

3 9 5.2e-06 0.00022 21.3 1.1 1 23 617 639 617 639 0.97

4 9 3.1e-06 0.00013 22.0 3.0 2 23 646 667 645 667 0.98

5 9 1.9e-06 8.3e-05 22.6 4.4 1 23 673 695 673 695 0.99

6 9 2.4e-06 0.00011 22.3 2.6 2 23 702 723 701 723 0.98

7 9 2.1e-05 0.0009 19.4 4.4 1 23 728 750 728 750 0.99

8 9 8.1e-06 0.00035 20.7 5.4 1 23 756 778 756 778 0.99

9 9 0.28 12 6.4 0.7 1 11 784 794 784 796 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2	86	3.7	0.2	5	20	489	504	488	506	0.92
2	9	9.2e-05	0.004	17.3	0.9	1	23	589	611	589	611	0.97
3	9	5.2e-06	0.00022	21.3	1.1	1	23	617	639	617	639	0.97
4	9	3.1e-06	0.00013	22.0	3.0	2	23	646	667	645	667	0.98
5	9	1.9e-06	8.3e-05	22.6	4.4	1	23	673	695	673	695	0.99
6	9	2.4e-06	0.00011	22.3	2.6	2	23	702	723	701	723	0.98
7	9	2.1e-05	0.0009	19.4	4.4	1	23	728	750	728	750	0.99
8	9	8.1e-06	0.00035	20.7	5.4	1	23	756	778	756	778	0.99
9	9	0.28	12	6.4	0.7	1	11	784	794	784	796	0.91

Sequence Information

Coding Sequence: ATGCCACGAGTAACCAGAAAGTCTCAGGAGCAAAGACGCCGCGAAGCTACAAATCGTAGTCGCTCTTACTACGCGGAAAATTCTAGTGGTGTACGTGAACGCAACTCCCAACGACTAACTAGTGCTCGCGAATCCACTGAATTTCGACAACAAGAACGCAGAGACGATGCCTTAGCGCGTTCTAGTCGTCGAAGCAATGTGTCGTTTAGAGAGCAGGAACAGGATCGAAATACTGCTGAACATGCGAATCGCAGATTAAATTCGGACTACAGAGATGGGGAGCGCCTACGAGATGCTGAACATCACGCTATCCGACGCAACATTCCGGAGATTAGAGATGAGGAACAGGAACGAAACACTGCGGAGCATGCTAGTCGCCGACTCAATGTGGAATACAGAGAAGAGGAACAGCAACGAAATACCGCAGAGCATGCTGATAGGAGATTAAATGCGGACTACAGAGATGAGGAGCGTCTACGTGATTCAGAACATCACGCTATCCGACGCAACATTCCGGAAATTAGAGATGAGGAACAGGAACGAAACACAGCAGAGCATGCTGATCGGAGACTTAATAAGCGCCAACGAGATGCTGAACATCACGCGATCCGACGCAACATTCCGGAAATTAGAGATGAGGAACAGGACAGAAATACCACGGAGCATGCCGATCGGAGATTAAATGATGAATACCGTGCTGAGGAACAGGATAGAAATACGGCGGAACATGCTGATCGGAGATTGAATGCGGAATACAGAGATGAGGAGCGCCAACGAGATGCTGAATATCATGCTATGCGACGCAACATTCCAGAAATTCGAGATGAGGAACAGGAGAGAAATACCGCGGAGCATGCTAATCGGAGATTGAATGAGGAATACCGAGATGAGGAGCGGCAACGAGATGCTGAATATCATGCTATGCGGGAGGAGCCAATGGAGGAGCCAATGGTGGAGCCAATGGAGCCACGGTCGTCCATATATTTGAATCCCTCTTCAGAGCGCGGCGGAAGGCATCGTGCCAAAAATTTGAGGAAGCATGCAAACAAGAAGGCCAGAAAAATTGCTGCTTATGCTGCAGCCCTTGCAGCCTCTTCATCCCAGCAGGCCAAAAATGGAGGGAAGACAAAGGCTGCCGCTAAGGCTGCAGCTGAAATAGATCAGAAATTGCCTGAGACCTGTGATCTAAATTTTTCGGATCCTGCAGTGGCTGAAGTAGCGGATACGTCAATTCCTGATCAGGCATGTCAGGATGAAATGCCTGATCAGGAATTGGTGGATCCTGACATGCCTGAAAAGGAATTGGCGTTTCCTGAAGTGCCTGATCCCCAAATGGCAACTTTATTAGCAGTAGATGCTGATGGCGCCCGCATATTGCGGAAGATGGCGGATGACGGGGAGGTCCACTTCGCCTTGGCAACACTGCCAACAGGAATGGGAGCTCGCTATTCAGCAGTTGTGTGCAACTGCGGAGCATTTTTTGCAAGCGCTGCAAATTTTCACATTCATTTGGACAATCTTTCTTCAGAGTCCTTTCCAGCAATTTTACTTGCCAATTGGTGGACTTTTGCAGTGGAGCTGCCGCGTAAATCGGTCTCCGATAAATTGGTCTTGCCCATTGTACAAGAAGACAATAGCCAGCAAATGGAAGGGTTGATGGAGTTGTTGTTGAACTCGGATTCGGACAGTGCCGATGTGCCGACAGTGCAGAACAATTTCGAGGATATTGTGCAATTCCTTGAAAGGGATATATCCAACGAGCATTATGAGTGCGATTACTGCCATGAGGCGTATGATACGCCGGAAAAGTTAAGGAAACACAAGGAAATTCATGACAGAGAAGGCGAACACAGTTGCTGGGAGTGCGGAAGAGCGTATGACTATGAGTCTGAGTTGAAAAAACATCTGCGCACTCATACTGGAGAGCGACCCAACAAGTGCGCCCATTGCTCAAAATCATTTGGGACCAAATCTAATCTGTCAGATCATATTCGCACTCATACTGGAGAGCAACCCTACAAGTGCGCCCATTGCTCAAAATCATTTGGGACCAAATTTGAACTGACAAGGCATCTACGCACTCATACTGGAGAGCGACCCAACAAGTGCGCCCATTGCTCAAAATCATTTGTGACCGAATCTGATCTGACAAATCATCTGCGCACTCATACTGAGCGACCCTACAAGTGCGCCCATTGCTCAAAATCATTTGGGAAAAAATCAAATCAGATAAGGCATCTGCGCACTCATACTGGAGAGCGACCCTACAAGTGCGCCCATTGCTCAAAATCATTTGGGACCAAATCTGATCTGACAAGGCATGTGCACACTCATACTGAAGAGCGACCCTACAAGTGCGCCCATTGCTCAAAATCATTTGGGACCATGCTCAAAATCATTTGGGGGGAAAATCGTGAAGGCATCTGCGCACTCATACTGAGAGCAACCCTACAATTGCGCCCATTGCTCAAAATCATTTGGGGTTAA
Protein Sequence: MPRVTRKSQEQRRREATNRSRSYYAENSSGVRERNSQRLTSARESTEFRQQERRDDALARSSRRSNVSFREQEQDRNTAEHANRRLNSDYRDGERLRDAEHHAIRRNIPEIRDEEQERNTAEHASRRLNVEYREEEQQRNTAEHADRRLNADYRDEERLRDSEHHAIRRNIPEIRDEEQERNTAEHADRRLNKRQRDAEHHAIRRNIPEIRDEEQDRNTTEHADRRLNDEYRAEEQDRNTAEHADRRLNAEYRDEERQRDAEYHAMRRNIPEIRDEEQERNTAEHANRRLNEEYRDEERQRDAEYHAMREEPMEEPMVEPMEPRSSIYLNPSSERGGRHRAKNLRKHANKKARKIAAYAAALAASSSQQAKNGGKTKAAAKAAAEIDQKLPETCDLNFSDPAVAEVADTSIPDQACQDEMPDQELVDPDMPEKELAFPEVPDPQMATLLAVDADGARILRKMADDGEVHFALATLPTGMGARYSAVVCNCGAFFASAANFHIHLDNLSSESFPAILLANWWTFAVELPRKSVSDKLVLPIVQEDNSQQMEGLMELLLNSDSDSADVPTVQNNFEDIVQFLERDISNEHYECDYCHEAYDTPEKLRKHKEIHDREGEHSCWECGRAYDYESELKKHLRTHTGERPNKCAHCSKSFGTKSNLSDHIRTHTGEQPYKCAHCSKSFGTKFELTRHLRTHTGERPNKCAHCSKSFVTESDLTNHLRTHTERPYKCAHCSKSFGKKSNQIRHLRTHTGERPYKCAHCSKSFGTKSDLTRHVHTHTEERPYKCAHCSKSFGTMLKIIWGENREGICALILRATLQLRPLLKIIWG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -