Lsta013599.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010001026.1:4808-6344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.5e-05 0.002 18.3 0.1 1 21 168 188 168 191 0.90 2 8 3.2e-06 0.00014 22.0 1.9 2 23 213 235 212 235 0.94 3 8 1.9e-05 0.00084 19.5 0.1 2 23 258 278 258 278 0.97 4 8 8.1e-06 0.00035 20.7 0.9 1 23 284 306 284 306 0.98 5 8 1.3e-05 0.00056 20.0 1.2 2 23 313 334 313 334 0.97 6 8 5.2e-08 2.3e-06 27.6 0.8 1 23 340 362 340 362 0.98 7 8 0.66 29 5.2 0.6 1 21 368 388 368 392 0.86 8 8 0.00037 0.016 15.5 0.1 1 22 434 455 434 458 0.91
Sequence Information
- Coding Sequence
- ATGAGCGCTGTGGATATTCAACTCAACATAAATGCTCAAACCTGTCGAGTTTGCCTGGCAACTCACGAGAGCGAGGCCACACTGTGCCTTTATGACGAAATCAAATACAATGAATTAAACGTGGAGCTCTGGCAATTGCTGGAAAATGTTACCAAAGTAAAGTGCACCTGGAATGAACCCAATCTGCCAACGCAATTGTGCCAGAACTGCACTCGTCGCTTGATTTCCGCCTATGAATTCATAAGGGAAGTGGAAAAGGCTCAGCAGATACTGCAGAACCTAAAGCCAACCACCATCGTGTTGGAGGAAAAGGAACAGCCACCACATCAACAGGATGAAGAGAATGTAATTGAGTTTGAGGGTGAGGAGGTGTCAGAACCGCAGCCAGAACTAGAACTTCAGTCGGACACTGAGGTGGAGGAAAATGTCCCAATGTTGGAGACAACCACTTTACGCAACTCGCAGCTTGGAAGCCGTTTGGCCCAATCACAAAAATTCATGTACAAATGTGACGTTTGTCCACGCGTTTTTGCCAAAAACGAATCTCTGGCTCGACATTTTGCCGCTGTTCACAGACAGACTGCAAATGTGGCCGCACAGGAACTGGCCCATGAGAGCAGCGGCAGCGGTTTGCTCACCTGTGAGCACTGTCCTCGTATATTCAAGCGTCAGGATACACTAAGTCGTCATATGCAAGCATTTCATCCAGAAGCTAACTATATTCCGGCCTCTACAGAAGATTCCTCATCTAAGCGATCTGCCAAGCGACGAGAGTGTCCTTATTGTGGCATTAGTTTCCCCTCGTCCAGTCTAACCATACACATACGTCGGCATACCGGCGAGAATCCCTACAAGTGTGATCAATGCGAGAAGGCCTTTCCACGCAGCCAGGACTTGAGTCTTCATCGGCGTCAGCATACGGGCGAAAGGCCCAATGAGTGTAAAATCTGCTCAAAAAAGTTTATTTCACTGAATAAACTGGCCAGGCACATGCGTTTGCATACAGGACAACGTCCGTATGCCTGCGACAAATGTGACAAGAGTTTCGTTCAGTCCAATGATTTGAAGATTCATATGCGCCGGCATACGGGGGAGCGTCCGTATCAGTGCGGTGTATGTGGCGATAGCTTTGTATGTGGCTCCCTATTGAATATCCATCGCAATCAAAAGGGACACCAAGAGGATAATATCCAAGATCAAACGGCCACACAAGCAGATCCCTATGAAAATGCGCGTGTTAACAAACGTCGAGCGGAGGATATGGCCCGAATGTGTCAACTACGAGCGTCGGAGGGTCCCTACAAGTGCGGTGTTTGTGGCTGGAACTTCAAAAGTGGCGCTCTCCTAACCATACATCGCAACAATATGGCACATTATGAGCTGGGCAAGATAAACTATGGTGATCCATTTGGCGACAGACGGAAACAGCAACTACAGCTGGAGGAGCAAAAAATGACGGAAGCAGTGGGAGAAGAAATATAA
- Protein Sequence
- MSAVDIQLNINAQTCRVCLATHESEATLCLYDEIKYNELNVELWQLLENVTKVKCTWNEPNLPTQLCQNCTRRLISAYEFIREVEKAQQILQNLKPTTIVLEEKEQPPHQQDEENVIEFEGEEVSEPQPELELQSDTEVEENVPMLETTTLRNSQLGSRLAQSQKFMYKCDVCPRVFAKNESLARHFAAVHRQTANVAAQELAHESSGSGLLTCEHCPRIFKRQDTLSRHMQAFHPEANYIPASTEDSSSKRSAKRRECPYCGISFPSSSLTIHIRRHTGENPYKCDQCEKAFPRSQDLSLHRRQHTGERPNECKICSKKFISLNKLARHMRLHTGQRPYACDKCDKSFVQSNDLKIHMRRHTGERPYQCGVCGDSFVCGSLLNIHRNQKGHQEDNIQDQTATQADPYENARVNKRRAEDMARMCQLRASEGPYKCGVCGWNFKSGALLTIHRNNMAHYELGKINYGDPFGDRRKQQLQLEEQKMTEAVGEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915588;
- 90% Identity
- -
- 80% Identity
- -