Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010002248.1:1-7263[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.3e-05 0.0027 17.9 1.6 1 23 156 178 156 178 0.93

2 8 1.6e-08 6.8e-07 29.2 2.6 1 23 184 206 184 206 0.98

3 8 6.4e-06 0.00028 21.0 0.8 1 23 212 234 212 234 0.98

4 8 4.6e-06 0.0002 21.4 1.0 1 23 240 262 240 262 0.98

5 8 2.3e-05 0.00099 19.3 1.4 2 23 354 375 353 375 0.96

6 8 2.4e-09 1e-07 31.8 1.6 1 23 381 403 381 403 0.98

7 8 0.0029 0.13 12.6 0.9 3 23 411 431 409 431 0.97

8 8 5.2e-05 0.0023 18.1 1.5 1 23 437 459 437 459 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.3e-05	0.0027	17.9	1.6	1	23	156	178	156	178	0.93
2	8	1.6e-08	6.8e-07	29.2	2.6	1	23	184	206	184	206	0.98
3	8	6.4e-06	0.00028	21.0	0.8	1	23	212	234	212	234	0.98
4	8	4.6e-06	0.0002	21.4	1.0	1	23	240	262	240	262	0.98
5	8	2.3e-05	0.00099	19.3	1.4	2	23	354	375	353	375	0.96
6	8	2.4e-09	1e-07	31.8	1.6	1	23	381	403	381	403	0.98
7	8	0.0029	0.13	12.6	0.9	3	23	411	431	409	431	0.97
8	8	5.2e-05	0.0023	18.1	1.5	1	23	437	459	437	459	0.99

Sequence Information

Coding Sequence: CTCGCCAATCAGCAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAACGAACCCCAACATGCACCCACCCAACCCGGAGGCGGCGAGCCCGGCGGCAATCCTCATGGACAACAGAATGGGGATCCCAGCAATGGTTTCCAGACCGCACCCGATTACTATGCTCCACGTCCACATGCCGGTCCGCAAGGTGGCATGTTGGCTCCGCCCGGATTCCCGCCCCTACATTACCTGAACAAGGCTGGACTACCCATGGAGCAGAATGGTGGTGCTGGAGCTGAGTCCTATGCCCTGCCCGCTGAACTTTTGCCCGGTGGTCAACAGCAAAATGGTGGTGCTCCAAGCAATACTGAGGGTCCCGCCACAACGAACGGCACAGCGGGACCTGGAGCTCCGCCCCCCGGCGGCCGCACGGGCAATGGTCCCGGGCGTCCGCACAAGAATAAGCCGCACAGCGATTTGCGTCTCTTCAAGTGCCTCACCTGCGGCAAGGACTTCAAGCAGAAGAGTACTCTACTGCAGCACGATCGGATACACACGGATGCACGCCCATTTCCCTGCTCCGAGTGCGGCAAGCGGTTCCGCCAGCAATCGCACCTGACGCAACACTTGCGCATTCACGCGAACGAAAAGCCCTTCACCTGCCCGTACTGTTCGCGCAGCTTCCGACAGCGCGCCATACTCAATCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATCTTCAAGAACGGGCCACACCCCACGCTGTGGCCCTCGGATGTGCCCTATCCGGGTGATGAGACGGACACCAAGGGTGACATTGCGGGTGCAGGAGGAGGCTATCATGACGAAGATTCTCAGGGCACGCCCGATGGTAGTGGGGGCATGCATTATCCATCGTACTTCAAGGACGGCAAGGCAGGTCAAAAGATCCTGCCGGAGGTATTGCAACATATTGGAGTGAGGCCCGCGAATATGCCGCTGTATGTGCGCTGTCCCATCTGCGATAAGGAGTTCAAGCAGAAGACCACTCTGCTCCAACATGGCTGCATACACATCGAATCGCGACCGTATCCTTGTCCGGAGTGCGGTAAACGCTTCCGCCAGCAGTCGCACTTGACGCAACATTTGAGAATTCATACGAATGAGAAGCCATTCGGTTGTATGTATTGCCCGCGATTCTTTAGACAGCGAACCATACTGAATCAGCATTTGCGTATTCACACCGGTGAAAAGCCCTACAAGTGTACACAATGTGGCAAGGACTTCCGACAGAAGGCCATTTTGGATCAGCATACGCGCACCCACCAGGTAGGGGATCGTCCCTTCTGCTGTCCCATGCCCAATTGCCGACCGGTGGCTGCCCCACAAACGGTAACCTTATCCATCACCTTACCGCCACCGCCGCACCCAGGACATCCGGGACATGCCGTACATCCGGGTGTATCTGCCGCACCACCGCCACCGCCGCCCCCCTCTCTATCGCATGCAATACCCATACATCCTCACATACACTCGATATTCGGATCTCTATGA
Protein Sequence: LANQQNSAPNPNQSSNEPQHAPTQPGGGEPGGNPHGQQNGDPSNGFQTAPDYYAPRPHAGPQGGMLAPPGFPPLHYLNKAGLPMEQNGGAGAESYALPAELLPGGQQQNGGAPSNTEGPATTNGTAGPGAPPPGGRTGNGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPYPGDETDTKGDIAGAGGGYHDEDSQGTPDGSGGMHYPSYFKDGKAGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRPVAAPQTVTLSITLPPPPHPGHPGHAVHPGVSAAPPPPPPPSLSHAIPIHPHIHSIFGSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: iTF_00919264; iTF_00915557;
80% Identity: -