Lsta014562.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010000422.1:366-3111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.2 3.1e+02 2.0 0.9 2 23 129 151 128 151 0.92 2 13 0.016 0.69 10.3 6.0 1 23 158 181 158 181 0.97 3 13 2.5e-06 0.00011 22.3 3.5 2 23 188 210 187 210 0.96 4 13 0.014 0.62 10.5 9.1 2 23 422 443 422 443 0.97 5 13 1.6e-06 6.8e-05 22.9 2.8 1 23 449 472 449 472 0.96 6 13 0.00035 0.015 15.5 0.7 1 23 477 500 477 500 0.96 7 13 8.1e-05 0.0035 17.5 5.5 1 23 518 540 518 540 0.96 8 13 0.00063 0.027 14.7 1.2 1 23 545 567 545 567 0.98 9 13 4.3e-05 0.0019 18.4 1.7 1 23 573 595 573 595 0.95 10 13 3.1e-05 0.0013 18.9 0.7 1 23 601 623 601 623 0.98 11 13 4.4e-07 1.9e-05 24.6 2.7 3 23 631 651 630 651 0.99 12 13 3.2e-08 1.4e-06 28.2 1.1 1 23 657 679 657 679 0.99 13 13 0.49 21 5.6 3.4 1 19 684 702 684 707 0.89
Sequence Information
- Coding Sequence
- ATGGCCAACATCAGCACCAGCAGTTTGTCCCTCACACTCAACGATTCCACCAACTGTCAGCGCTTGTGCCGCGTCTGCCTGCGCCAGGTGGGCGAGGAGCAGCCGCTGCATTTCATCTACAATGAGGCTCCCGTGGAGCAGGGAGCCAATCTGTCGCAAATTTTGAACGAATGCCTCAGCTTTATGTGTGAACGGTCCAGCGACGATCAAAAGATGCCCCACCACATGTGCGAGCTGTGCCTGAAAGCAGCCTGCCACGCCTACCGCTTCAAACGCGAGGCCGAGAAATCTTATTGCTCACTGATGTCTTTGCTGGGGCACAAACCCAAAATGAAATCGTCTGGCAGTGATGTGTGCACCCAGACAGAGCAGGTGGCTTTGTTGCCCTGCGAAATGTGTCATGACCAGTTCCTCAATAGCCTGGAGCTGCGTTTGCACCGGAATCGTGTGCATGGCAAGGGAGCCGAGGAGTTCAAGTGCAAGTTTTGTCCGGAGCATTTCCAACAACTACGCCAGCTGCGCAGTCATTTGGCGCGCTGTCATGACCAAGTGGAGCGTCTCCAGTGTCGGTACTGCCAGCGTGCCTTCAGCCGGCGGGATCATCTGCTGCGACATATGAGAAATATGCACAAATCCGATCAAGCGGAGCAGGTGCAAGAGACGGCGGATGAAGCGCAGGAGGAGCTGTTGGAATCCGCTGAGGTTCTGCTCAACGAGGTGGAATCGGGCGAGCCGGGGCCGGAGGAGTGCAATACAAATCCCATTTCCAGCAATGAGGAGGACAACGCGGATAATGATGAAGAGGCCAAGCAGTCGCTGTGGCTGCACATCAAACCGGAGCCTAGTTTGGAACTGGAGGAGGATGTTAAACCGGAGAAGAAGCGCAGAAGAAAAGCAGAGCCGGAGTTAAGTGAGACGGAGGCTTTGGTCAAGGATGAACCACTGACACAGCTGGAGACCGAGATAAACATTAAGCAGGAGGATCATACCGTGCACAGCGCCGAGGAAGAAGAGGAGTACGAAGAGGACGAAAAGGATCCAACTGTAACAGGAGAGGTGCCACCCAGCGATGATGATGACGATGACGAACCCTTTGAGTTTATTGACGAAGAGAGCGCCCTCGAGGACGACTCCGACGAAGAGTACGATGATGAGGACGCCGATGGTAAGCCCAAGGTGGAAATCGTACGCGAGTATTTGCAAAATTCCAAGCCCAAGCGCCGCCGACGCCGGAACAAACAAAGCGAACCCAATCCCGAGAATCGCTGTGATGTCTGCCAGCGCACCTTCTCCCGCCATTGTCATCTGCTGCGCCACAAGCTCTCCCATCTGGAAAAGAAACCGCACAGCTGTCCGCACTGTCCCAAGGCTTTTGCCCGCAGTGACCATCTCAAGGCGCATGTCCAGAGTCTGCATAGCAACAAGGAGCACAAATGTGAGCTCTGTCAGGCGGCATTTGCCCGCTCCGAGGCTCTCGAACGGCACAAGCTGAGCAAGCACAATGGCGAGGGCCTGCAGGCGGGCAGCGAGCTAAAACTTCATCTGGCGGAGCACACGTGCGAGTACTGCTCCAAGCGTTTCTCGAGCAAAACCTACCTGCGCAAGCATACACTGCTCCACACGGACTTTCTCTATGCGTGTAAAAGCTGCGAGGAGACATTCAAGGAGCGCCAGCAGCTCCGAGAGCACGAGAAGACCCACACGGGCCAGAGGAACTTTCTGTGCTGCATCTGTGGCGATAGTTTTGCACGCAACGATTACCTCAGGGTGCATATGCGTCGTCATAATGGCGAGAAGCCGTACAAGTGTCGCTACTGTGTCAAGGCCTTTCCCCGAGCCACGGATCTCAAGGTGCACGAGCGCTATCACACCGGCACCAAGCCCAATTTATGCAATACCTGTGGCAAAAGTTTCCATCGCGCCTACAATCTCACCATACACATGCGCACCCACACGGGCGAGCGTCCCTACAAGTGCGATCAGTGTCCCAAAAGCTTCACCCAGAGCAATGATCTCAAGGCACACATACGTCGGCACACCGGCGAGCGTTACAAGTGTCCACACTGCGATGCCTATTTCCTGCAGCTGTACAACATGAGGAATCATTGCCTGAGCGCGCATAATAAGCATATTGAGACCAAGACGGGACGCCTACAGCGCACAGGTCTTCTGGACGAAAGCAATCAATCGCATTTGACCACTGTGGTCATGCCTCCGGGTCGGTATCAGGATAATCAGCCGCAGCAGCAGCACCTGGGCAATCAACAAATGCCAGCAGCTACCATACTGCACTCCCCTTCAGCTACCTACAATAGTACACCAGTTGTTACCACCACAACAGGACCTCTGGCACCAGCCACCGCAGTGGCGGCCAATCTAGTGGATGGAACCGCCTTTGCATCAAACACAACCGCCCCATTTGGGGCCTTCAATTTCCCGCCTGTGGTCATGGCCCATCTCATGTACAATCATGCCGGAGGCGGCGGCGGAACTGGCGGTAGCAGCCAGCATAGTCAACAGAGCAACGCCAGCGGCAGTGAGGCCGGCAAATAG
- Protein Sequence
- MANISTSSLSLTLNDSTNCQRLCRVCLRQVGEEQPLHFIYNEAPVEQGANLSQILNECLSFMCERSSDDQKMPHHMCELCLKAACHAYRFKREAEKSYCSLMSLLGHKPKMKSSGSDVCTQTEQVALLPCEMCHDQFLNSLELRLHRNRVHGKGAEEFKCKFCPEHFQQLRQLRSHLARCHDQVERLQCRYCQRAFSRRDHLLRHMRNMHKSDQAEQVQETADEAQEELLESAEVLLNEVESGEPGPEECNTNPISSNEEDNADNDEEAKQSLWLHIKPEPSLELEEDVKPEKKRRRKAEPELSETEALVKDEPLTQLETEINIKQEDHTVHSAEEEEEYEEDEKDPTVTGEVPPSDDDDDDEPFEFIDEESALEDDSDEEYDDEDADGKPKVEIVREYLQNSKPKRRRRRNKQSEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHSCPHCPKAFARSDHLKAHVQSLHSNKEHKCELCQAAFARSEALERHKLSKHNGEGLQAGSELKLHLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFKERQQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDESNQSHLTTVVMPPGRYQDNQPQQQHLGNQQMPAATILHSPSATYNSTPVVTTTTGPLAPATAVAANLVDGTAFASNTTAPFGAFNFPPVVMAHLMYNHAGGGGGTGGSSQHSQQSNASGSEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919254;
- 90% Identity
- iTF_00918370; iTF_00915545;
- 80% Identity
- -