Lsta004871.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- Paris
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010000987.1:28406-29695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.7e-05 0.0033 17.6 6.9 1 23 104 126 104 126 0.98 2 11 0.0095 0.41 11.0 8.0 1 23 132 154 132 154 0.96 3 11 6.7e-06 0.00029 20.9 3.0 1 23 160 182 160 182 0.99 4 11 1.7e-05 0.00072 19.7 3.9 1 23 188 210 188 210 0.94 5 11 2.1e-06 9.2e-05 22.5 5.0 1 23 216 238 216 238 0.97 6 11 1.3e-05 0.00054 20.1 1.9 1 23 240 262 240 262 0.98 7 11 0.009 0.39 11.1 7.6 1 21 268 288 268 289 0.96 8 11 1.6e-05 0.00068 19.8 2.1 1 23 300 323 300 323 0.94 9 11 0.00014 0.006 16.8 0.6 1 23 327 349 327 349 0.98 10 11 2.4e-06 0.00011 22.3 4.0 1 23 356 379 356 379 0.98 11 11 0.00017 0.0075 16.5 7.8 1 23 392 414 392 414 0.99
Sequence Information
- Coding Sequence
- ATGGAACTCCAATGTCGCGTTTGCGGCATTGGTACCAGCTCCGTTCCCTTGCACAAAATTCATGGAGAAGGAGCAACCGAACCGTATCTGGCGCAGATGATAACCGAATGCACCGGATACCAGGTTAATATTAAAGATGCTCTACCTCAACAAGTCTGTATGGTATGCTTGGAAGATGCACAAATAGCATTCAGTTTTAAGCGTAGATGCGAGGAGAGCCTTCAGTATTTCTGGCAAATGAATCAGAAGGAGGGACAAGAGGAGGAAGAGACACTGGAGTTACCAAGATCAGCTGATAGTGATCTACCCCATAAATGTACATATTGTTCCAAAAGTTTTCGACAAAAGTGTCAAGTCGTGGACCACATCCGCACCCACACAGGAGAACGACCCTTTCAGTGTTCCGATTGCTCAAAGTTCTTCAAAACACACAGCAGTCTTCGTTGTCACCGCACCATACACACCGGAGAGCGACCCTTTAAATGTAACCACTGCCCCATGGCCTTTCGCCAAAAGTATCAAGTCGAGGAGCACACACGCACGCACACTGGCGAACGACCCTTTAAGTGTCCTCACTGCACGCTGAGCTTTAAAACCCGCAGCAGTCTACGGAATCACAACATCCAGCACATCAACGAGCGATTCCACAAGTGCCCGGATTGTTCAAAATCATTTTCTCATTCATATAAGCTGCAGAAACATGCCCAAGTTCATGCACACAAGTGTGCGGAATGTTCGAAAACCTTCAAAACAGAAGCCAATCTTCTGGTGCACTCGCGGTCTCATACAGGAGAACGACCCTATAAGTGTGAGCACTGCTTAAAGGATTTCCCTCATCAAATGCATCTTCACAAACATATTTGCAATCGTAGCAAAGATGATGTTCAGGAACGACCCTTCAAGTGCCAGCATTGCCCAAAGGCTTTTACCTATGCGAACGTTTTGAAGCGACACATGGAGGACAAACATGAGCGCACATATAAGTGTTCTCAGTGCCCAATGGTTTTTGTGAGGGAAACGATTCTCCAGAGACACATCCGTTTTCATACAGATCAAGAAGATAGCTTTAAATGTTCATACTGCACAAAAGCCTTCTACTTACAAGGCCATTTTGAGCGACATATGCGCACTATCCACAAACAGCACATCGAGGAAGGAATGGTAACGCGACCCTACAAGTGTGCCCACTGTACGGATTCATTTAAACAGCATAGCCATCTTCAGGTACATCTGCGCACTCACGCAAACATTGGGAAATCGCTGATACAAGCCACATCCACAACTGATTAG
- Protein Sequence
- MELQCRVCGIGTSSVPLHKIHGEGATEPYLAQMITECTGYQVNIKDALPQQVCMVCLEDAQIAFSFKRRCEESLQYFWQMNQKEGQEEEETLELPRSADSDLPHKCTYCSKSFRQKCQVVDHIRTHTGERPFQCSDCSKFFKTHSSLRCHRTIHTGERPFKCNHCPMAFRQKYQVEEHTRTHTGERPFKCPHCTLSFKTRSSLRNHNIQHINERFHKCPDCSKSFSHSYKLQKHAQVHAHKCAECSKTFKTEANLLVHSRSHTGERPYKCEHCLKDFPHQMHLHKHICNRSKDDVQERPFKCQHCPKAFTYANVLKRHMEDKHERTYKCSQCPMVFVRETILQRHIRFHTDQEDSFKCSYCTKAFYLQGHFERHMRTIHKQHIEEGMVTRPYKCAHCTDSFKQHSHLQVHLRTHANIGKSLIQATSTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00920016;
- 90% Identity
- iTF_00920016;
- 80% Identity
- -