Lsta012565.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa stackelbergi
Gene Symbol
su(Hw)
Assembly
GCA_018904235.1
Location
JAEIFU010002798.1:13838-22661[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0013 0.058 13.7 2.1 1 20 203 222 203 224 0.94
2 12 3.5e-06 0.00015 21.8 0.4 3 23 275 296 273 296 0.93
3 12 0.074 3.2 8.2 0.1 1 23 302 324 302 324 0.95
4 12 6.9e-07 3e-05 24.0 2.4 1 21 331 351 331 352 0.95
5 12 7.8e-06 0.00034 20.7 1.0 2 23 364 385 363 385 0.96
6 12 0.00013 0.0058 16.8 5.3 1 23 396 418 396 418 0.99
7 12 0.0001 0.0045 17.2 0.9 1 23 424 446 424 446 0.97
8 12 1.2e-05 0.00052 20.1 0.7 1 23 452 474 452 474 0.98
9 12 3.5e-06 0.00015 21.8 2.3 1 23 480 502 480 502 0.97
10 12 1.9e-05 0.0008 19.5 0.9 1 23 506 528 506 528 0.97
11 12 1.2e-05 0.00053 20.1 0.4 1 21 536 556 536 560 0.93
12 12 2.2e-05 0.00096 19.3 0.4 3 23 580 601 578 601 0.96

Sequence Information

Coding Sequence
ATGGAGGAGAAAAAATCAGACAAGGAGGGGGAGAGCGATGCCGGAAAAAGAACCACTGTGCTTAAGATTGTGGATGTGGAGAAACTTTTGCCGGAAAAGAAAAAAAAATCACCTGCCAAGCGCTTGAAAGTAAATAACGATGCGGTCACGGCCGGAGCCACTTCGCCAGAGAAGGAGAAGCGCAACAAAATACTCAACGATGCTCCCGTTGCCACGCCCCCCAAGGGGGACACCCGCGTGAAAATATTAAATGAGAAGCGTATAACGCCAGCCACCGTGCCCGTGGAGACAACCAAAATAAGGACCTTCTCTACCAAGAAACAGCAAACAATGGATCACTATGTGCTGCAGGCGGTGAAAAATGAGAACAGCAAAGCGGAAGCCATCACCACAACCAATGTGGTTATAGCAGCGCCTAATCAGGACGATGATGATGATGATGATACCATAGCCATTATTCTGGCCGATGATGAGGAACTTGAGCATGCTGTGGTGGTCCCTGACAACGGTCAAGAAATAGTGGTATCTGGCGAGGAGGAAGACGACGAGGAAGATGAGGTGGGCAACGCTGGCCAGACTACCAATACCATGAAGGAGATTGTGGAGCATATTTGTGGGAAATGCTACAAGACATTCCGACGGGTCAAGAGTTTGAAAAAGCATTTGGAATTCTGTCGCTACGACAGTGGCTATCACCTGCGCAAGGCGGACATGTTGAAGAATCTGGAGAAGATCGAAAATGATGCGGTTGTCATGGAGAAGAAGGACATTTGCTTCTGCTGCAGCGAGAGTTATGACACTTTTCATCTGGGCCACATCAATTGTCCCGATTGCCCCAAGTCCTTCAAGACCCAGACCAGCTATGAACGTCACATTTTCATCACCCACTCCGAGTTCAATGATTACCCCTGCTCCATTTGCAATGCCAATTTGCGCAGTGAGGCCCTGTTGAAGCTGCATGAGGAGCAGCACAAGTCTCGGGGCAAACCCTATGCCTGTAAGATCTGTGGCAAGGACTTTACGCGCTCCTATCACCTGAAGCGGCATCAGAAGTATTCCTCATGCTCGGCCAACGAGAACGATACCATGAGCTGCAAGGTCTGCGATCGTGTCTTTTATCGCCTGGACAATTTGCGTTCGCATCTGAAGCAGCATCTGGGCACCCACATAGTGAAGAAGCCAGAGTACATGTGTCATGTGTGCAAGAATTGCTTCTACAGCTTGTCCACGCTTAACATCCACATACGCACGCACACGGGTGAGAAACCCTTCGATTGCGATCTGTGCGACAAAAAGTTCTCCGCCTTGGTGGCCCTTAAGAAGCATCGACGCTATCACACTGGCGAGAAACCCTACAGTTGCACTGTGTGTAATCAATCCTTTGCCGTCAAAGAAGTGCTCAATCGTCACATGAAACGCCACACTGGTGAACGTCCACATAAGTGTACCGAATGCGGCAAAAGCTTCATTCAGGCCACCCAGCTGCGCACCCATTCCAAGGTCCATGTGCGTCCCTATTCCTGCGATTTGTGCGATGAAAAGTTCAAAACCGAAAAGCAACTCGAGCGTCACGTCAAGGATCACTCCAAGCAGAAGCGTCAAAGCTTTACCTGTTCCCAGTGCAAGCGTAGCTTTCGTACTGCAGCTCAACTCAAGGAGCATATGGACGCTGGCGATCATACGCCCAAACCGGTAGCCGTCAAGCGCTCCAACATGAAAATCATTGGACGCACAGATTGCGCCATTTGTGACAAAAATTTCGACAGCACCGATACCTTGCGCAAACACATACGCAGTGTCCATGAGTGTGATCCAGATGACATTTTCGGAGTAGAGCCACCCTCCAAGCGTAGCAGGAAGGTGCTGAAACCCATTGTAGAGACAGATGTGGATGATGTGACCCTGAACACATCGGCTGGCTCGTTGATTTCCAGTCAAACCGATGGCAATGGTGTGGTGGTGCGTGAATTTCTGGTGGATGAGGACGATGGCACCACCGCTCAGACCATTATGCTGGAGAATGAAACCTACACCATATTGCCCTTGGAGGGGGCCATCGAGAGCGAACCGCTGGTAGCACCCAGCCATCAGAAGCCGCAGTCCAAAGAGAAAGTGTCGCCGGTGGTCAAGAAAGAGCAGCGCAAATCGTTGGCCGCCAGTCTGGCAGCTGCCATTGCCGATAACCTGGATGACGAGGAGTTCAATGGCGAAGTTTTGACCGAAGACGATATAAAGCTAAAGGCGAATGTGGCCAAGCTGATTGATATGCTGGTGGATCCACCCATTTTAAAGAAATACGGCTGGCCCAACACTTCCGAGGAGACGGTGCTGTGCAAAGTGATTGAGAATTGTGGACATGATCTGACCAAGGGTGGGGAGAACTATGCCGAACTGGACTATGGCAGCCGCATGCGTGAATATTGCAAGCTATTGTTCACGGTGGTCATACACAATGATTCCATTAAGGCATTGCTCAATAATTTCCCCATTGATGATGTGATTGAATATGTCTTGGGCGATGAGGATCAGGAGGAGGGCAGCAATGACAAAGATGACTCCCATGAGGTTGAGGACGACGAAGAGGCCGATACTGATACTGATTCATTGGTTGACAAGGAGGGGGAACAAGCAGCCAAGTCTTAA
Protein Sequence
MEEKKSDKEGESDAGKRTTVLKIVDVEKLLPEKKKKSPAKRLKVNNDAVTAGATSPEKEKRNKILNDAPVATPPKGDTRVKILNEKRITPATVPVETTKIRTFSTKKQQTMDHYVLQAVKNENSKAEAITTTNVVIAAPNQDDDDDDDTIAIILADDEELEHAVVVPDNGQEIVVSGEEEDDEEDEVGNAGQTTNTMKEIVEHICGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIENDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNANLRSEALLKLHEEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRSHLKQHLGTHIVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQSFAVKEVLNRHMKRHTGERPHKCTECGKSFIQATQLRTHSKVHVRPYSCDLCDEKFKTEKQLERHVKDHSKQKRQSFTCSQCKRSFRTAAQLKEHMDAGDHTPKPVAVKRSNMKIIGRTDCAICDKNFDSTDTLRKHIRSVHECDPDDIFGVEPPSKRSRKVLKPIVETDVDDVTLNTSAGSLISSQTDGNGVVVREFLVDEDDGTTAQTIMLENETYTILPLEGAIESEPLVAPSHQKPQSKEKVSPVVKKEQRKSLAASLAAAIADNLDDEEFNGEVLTEDDIKLKANVAKLIDMLVDPPILKKYGWPNTSEETVLCKVIENCGHDLTKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKALLNNFPIDDVIEYVLGDEDQEEGSNDKDDSHEVEDDEEADTDTDSLVDKEGEQAAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00916434;
90% Identity
iTF_00915508; iTF_00918349;
80% Identity
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