Lsta006435.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa stackelbergi
Gene Symbol
-
Assembly
GCA_018904235.1
Location
JAEIFU010001286.1:45532-47367[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.5e-06 0.00028 21.0 2.4 1 23 153 175 153 175 0.99
2 16 2.4e-06 0.00011 22.3 0.8 1 23 181 203 181 203 0.99
3 16 1.3e-05 0.00056 20.0 3.4 1 23 209 231 209 231 0.99
4 16 0.0016 0.072 13.4 2.8 1 23 237 259 237 259 0.99
5 16 0.00027 0.012 15.9 8.3 1 23 265 287 265 287 0.99
6 16 4.1e-07 1.8e-05 24.7 4.9 1 23 293 315 293 315 0.99
7 16 1e-05 0.00044 20.4 3.5 1 23 321 343 321 343 0.99
8 16 1.3e-05 0.00058 20.0 0.3 1 23 349 371 349 371 0.98
9 16 1e-05 0.00045 20.3 6.0 1 23 377 399 377 399 0.98
10 16 0.00057 0.025 14.9 1.4 1 23 405 427 405 427 0.99
11 16 1.3e-05 0.00056 20.0 3.4 1 23 433 455 433 455 0.99
12 16 4.6e-05 0.002 18.3 1.2 1 23 461 483 461 483 0.99
13 16 1.4e-05 0.00061 19.9 5.0 1 23 489 511 489 511 0.96
14 16 0.00057 0.025 14.9 1.4 1 23 517 539 517 539 0.99
15 16 5.9e-06 0.00026 21.1 3.8 1 23 545 567 545 567 0.98
16 16 0.00018 0.0079 16.4 3.1 1 23 571 594 571 594 0.97

Sequence Information

Coding Sequence
ATGGAAAGAGCAGTGAGACCACAAGTGGCCAAACAATGCCGCGTTTGCAGATGCAGTTTGGCAGATGGCAGCTACACAAATTGGCAAAATATATTCACTGACTCGGACTTGTGGTGTATAATCGAGGAGGTGACTGGACAGGAGGTTAAACTGGATGAGAGTCTACCCGAAAGTATATGCCCTTCTTGCTTGGTAGCGGCCAGAACTGCATTGAACTTTAAGCGACGATTTAAGAAAAGTCTTCAGCTAATGCAGCAGAATAGAACGAGGAACCAGGATTCGATGGAAGTCCCTCCAGAGGAGATCTTCAACATAAGCGAAGAGTCACTCTCTGATTTGGATGATTTGGAATTTCTCACAGGAGACGAAAGCGAAGAAGACGATATGAAAGAGGAGCAACTTCACACACACACTGGCAAAGGGTCAAGCCAAATCACTAAAAATGAAGAACGACCCTTTAAATGCTCTCAATGCTCGAAAACCTATGTCAATAAGAACTCACTAGACAGACATATTCGCTCTCACACTGACGAGCAACACTTTGAATGTTCTTACTGCTCCAAAACTTTTGGCAATAACCGCGCTCTAATCCTACACCTACGCACACATACTGGGGAGCGACCCTTCGAGTGTTCACTGTGCTCGAAAACCTTTACCCAACGCTGCGTTTTAAAGGCTCACATTCGCACACATACGCGCGAACGACCCTTTAAATGTAACCAGTGCTCTAGTACCTTTGCCATCAAATGTCAACTGCAGATTCACCTACGCATTCATACTGGCGAAAGACCATTCGAATGCTCCCATTGCTCGAAAACCTTTTCATGTAATACCCATCTAACGGCTCACATACGCACTCATACTGGAGAGCGACCCTTCAAATGCTCCCATTGCTCGAAAACCTTTGCCCAAAGCAACAATCTGACGACTCACCTACGCACACATACCGGCAAAAGACCTTACCAATGTTCCCAGTGCTCTAAAACCTTTGCCCACAAAAATCTACTAAAGATTCACCTAAGTACACATACTGGCGAGCGGCCTTTCCAATGTGCTCAGTGCCCTAGAAGCTATGCCGTCCAAAGTCAACTAAAGATTCACTTGAGCACTCACAATAGCGAGCGAAACTTCGAATGCACACATTGTACAAAAACCTTTACCAGTAAAAACCATCTAAAGATTCACCTAAGCATTCATACCGGCGAGCGACCCTACGAATGTTCACACTGCTTAAAAACGTTTCGTTTACCAGGAATTCTAAGGGAACACCTACGCACACATACTGGGGAGCGACCCTTTGAGTGTTCACTGTGCTCGAAAACCTTTACCCAACGCTGCGTTTTAAAGGCTCACATTCGCACACATACGCGCGAACGACCCTTTAAATGTAACCAGTGCTCTAGTACCTTTGCCGTCAAAAGTCAACTACAGATTCACTTGAGCACTCACAATAGCGAGCGAAACTTCGAATGCACACATTGTACAAAAACCTTTACCAGTAAAAACCATCTAAAGATTCACCTAGGCATTCATACCGGCGAGCGACCCTACGAATGTTCACACTGCTTAAAAACGTTTCGTTTACCAGGAATTCTAAGGGAACACCTACGCACACATACTGGGGAGCGACCCTACGAATGTTTCCAGTGTTCGAAAACCTTTACCACCAAAAGCAATATGTATCGGCATCTAAACAGTCATACCGGCGAATTTGAGTGCACCCACTGCTCGCAAGCCTTTAGAGAAATGGGACATCTAAAACGACACCTTCTGCGCGCTCATGCCGGCAAGGAACCATTTCAAGATTCGATTGCGCAAGAACCTTTACCACTTTAA
Protein Sequence
MERAVRPQVAKQCRVCRCSLADGSYTNWQNIFTDSDLWCIIEEVTGQEVKLDESLPESICPSCLVAARTALNFKRRFKKSLQLMQQNRTRNQDSMEVPPEEIFNISEESLSDLDDLEFLTGDESEEDDMKEEQLHTHTGKGSSQITKNEERPFKCSQCSKTYVNKNSLDRHIRSHTDEQHFECSYCSKTFGNNRALILHLRTHTGERPFECSLCSKTFTQRCVLKAHIRTHTRERPFKCNQCSSTFAIKCQLQIHLRIHTGERPFECSHCSKTFSCNTHLTAHIRTHTGERPFKCSHCSKTFAQSNNLTTHLRTHTGKRPYQCSQCSKTFAHKNLLKIHLSTHTGERPFQCAQCPRSYAVQSQLKIHLSTHNSERNFECTHCTKTFTSKNHLKIHLSIHTGERPYECSHCLKTFRLPGILREHLRTHTGERPFECSLCSKTFTQRCVLKAHIRTHTRERPFKCNQCSSTFAVKSQLQIHLSTHNSERNFECTHCTKTFTSKNHLKIHLGIHTGERPYECSHCLKTFRLPGILREHLRTHTGERPYECFQCSKTFTTKSNMYRHLNSHTGEFECTHCSQAFREMGHLKRHLLRAHAGKEPFQDSIAQEPLPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-