Lsta007491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa stackelbergi
Gene Symbol
-
Assembly
GCA_018904235.1
Location
JAEIFU010001221.1:57212-58807[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00095 0.041 14.2 4.2 1 23 138 160 138 160 0.99
2 14 2.8e-06 0.00012 22.1 5.8 1 23 166 188 166 188 0.98
3 14 1.3e-05 0.00058 20.0 2.4 1 23 194 216 194 216 0.98
4 14 5.3e-07 2.3e-05 24.4 1.2 1 23 222 244 222 244 0.98
5 14 1.7e-06 7.3e-05 22.8 0.7 1 23 250 272 250 272 0.99
6 14 1.7e-06 7.3e-05 22.8 3.5 1 23 278 300 278 300 0.99
7 14 0.0001 0.0044 17.2 1.1 1 23 306 328 306 328 0.98
8 14 1.6e-05 0.0007 19.7 1.1 1 23 334 356 334 356 0.98
9 14 3.5e-06 0.00015 21.8 1.3 1 23 362 384 362 384 0.99
10 14 1.4e-05 0.00063 19.9 3.6 1 23 390 412 390 412 0.98
11 14 2.2e-05 0.00096 19.3 0.9 1 23 418 440 418 440 0.99
12 14 6.6e-07 2.9e-05 24.1 1.3 1 23 446 468 446 468 0.98
13 14 8e-06 0.00035 20.7 2.2 1 23 474 496 474 496 0.98
14 14 1.8e-06 7.6e-05 22.8 5.9 1 23 502 524 502 524 0.99

Sequence Information

Coding Sequence
ATGCATAGCAGAGCCAAGCTATGCCGAGCTTGTAAGTCCAGTTCGAGCGCTGATGTGGACACCAACTGGAGGAATATATTCAGTTCCTCCGACTTGCTGATTGTATTGGAGGAGGTAACCGGTCGGATTGTCCCACCTACTGAGAATCTACCTGAATGGATTTGCCCTTCTTGCTGGGCAGCGGCCAAAATAGCGTTGAACTTTAAGAGACGATTTGAGAAGAGTCTGCAGTGCCTCAACGAGCACATGAAGCAGAATGAACCCACATCCATTATCGACGGTCCGCACTTCAAGCAAAAGGAGACCTTTGACAGCGAGTGCACTAGCGAAGAGAGCGAATCAGAAGACGAGAGCTACAATTCCGAAAGTCTTAGCGAGGAACAGTCCTTGACAAGGACTGACAAAGGACCCTACAAATGTTCTTTTTGCCCGCAGATTTTTAACTATAAATGCAGGCTAGAGACACACCAGCGCGTTCATACTGGCGAACGACCCTACAAATGTTCTAGCTGCTCGAAGACCTTTAGTAGCAAGAGCCATCTAACGAGACACAATCGAATCCATACTGGCGAACGATCCTTTATGTGTTCACAGTGCCCGAAGACTTTTAGCCTTAAGGTTAATCTGGAGCAACATCATCTCACGCATACGAACGAGAAACCCTTTGAATGCTCTCTTTGCCCAAAGAAATTTAGTAGTAGGGGCAATCTGTGGAAACACAATCGCACGCATACTGGCGAACGGCCTTACAAGTGTACAGAGTGTTCGATGTCCTTTGCCCAAAGTGGCTCTCTAAAGAGCCATCTTCTTACACATACGGGCGAGAAACCCTTCAAATGCTGCCACTGCCCAAAAATGTTTGCCCAGAAAGACGGGCTAAATGTTCACATACGCAGTCATACTGGCGAACGACCCTACAGTTGTGCTAGCTGCTCGAAAAACTTTATCTCCATTAGCGATCTACGGAGACACAATCGCACGCACACTGGCGAACGACCGTTCAATTGTACAGAGTGCTCAATGTCCTTCATGCAAAGTAGCTCTTTAAAGGAGCATCTTCTCACGCATACTGGCAAACGACCTTTTAAGTGTACAGAGTGCTCAAAGTCTTTTGCCCAATTCGGCACTTTAAGCAGGCACCTAATTACTCATACTGGCAAAAGTGCCTTCACATGTTCCCACTGCTCAAAGACCTTTGCAAGTAAAGGCACTCTGGAGCAACACAATCGCTCGCATACTGGCGAACGGCCTTTCAAGTGTACAGAGTGCTCAATGTCTTTTGCCCAATTCGGCACTTTAAGCAGGCACCTAATTACTCATACCGGCAAAAGTGCCTTCACATGTGGGAACTGCTCAAAGACCTTTGCAAGTAAAGGCAATCTGGAGAGACACAATCGCACGCATACTGGGGAACGACCTTTCAAGTGTACAGAGTGCTCAATGTCTTTTACCCAAAGCGGCACTCTAAAGAGTCATCTCTTCACGCATACGGGAGAGAAACCCTTCAAATGTTCCCACTGCTCAAGGTCTTTTATACGAAATGTACATTTAACGAGACACCTTCGCATTCATATTGATGAAGGAAGTAATAAATGA
Protein Sequence
MHSRAKLCRACKSSSSADVDTNWRNIFSSSDLLIVLEEVTGRIVPPTENLPEWICPSCWAAAKIALNFKRRFEKSLQCLNEHMKQNEPTSIIDGPHFKQKETFDSECTSEESESEDESYNSESLSEEQSLTRTDKGPYKCSFCPQIFNYKCRLETHQRVHTGERPYKCSSCSKTFSSKSHLTRHNRIHTGERSFMCSQCPKTFSLKVNLEQHHLTHTNEKPFECSLCPKKFSSRGNLWKHNRTHTGERPYKCTECSMSFAQSGSLKSHLLTHTGEKPFKCCHCPKMFAQKDGLNVHIRSHTGERPYSCASCSKNFISISDLRRHNRTHTGERPFNCTECSMSFMQSSSLKEHLLTHTGKRPFKCTECSKSFAQFGTLSRHLITHTGKSAFTCSHCSKTFASKGTLEQHNRSHTGERPFKCTECSMSFAQFGTLSRHLITHTGKSAFTCGNCSKTFASKGNLERHNRTHTGERPFKCTECSMSFTQSGTLKSHLFTHTGEKPFKCSHCSRSFIRNVHLTRHLRIHIDEGSNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-