Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.12 1.1e+02 2.8 0.0 18 32 8 22 4 25 0.83

2 6 3.6e-05 0.033 14.0 0.4 15 41 111 134 104 136 0.88

3 6 0.00035 0.32 10.8 0.5 18 41 142 162 138 163 0.91

4 6 0.00069 0.63 9.9 0.4 18 41 170 190 166 191 0.90

5 6 0.74 6.8e+02 0.2 0.4 18 29 198 209 194 218 0.81

6 6 0.016 15 5.5 5.6 13 39 221 244 211 250 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.12	1.1e+02	2.8	0.0	18	32	8	22	4	25	0.83
2	6	3.6e-05	0.033	14.0	0.4	15	41	111	134	104	136	0.88
3	6	0.00035	0.32	10.8	0.5	18	41	142	162	138	163	0.91
4	6	0.00069	0.63	9.9	0.4	18	41	170	190	166	191	0.90
5	6	0.74	6.8e+02	0.2	0.4	18	29	198	209	194	218	0.81
6	6	0.016	15	5.5	5.6	13	39	221	244	211	250	0.83

Coding Sequence: ATGGAACCACAAGTGGCCGAGCAATGCCGTGTTTGCATGTCCAGTTTGGCAGATGGCACCAAAACCAACTGGCGAAATATATTCACCTACTCGGACGCTGGACTAGGAGGCTTGTGGCTTATAATCGAGGAGGTGACTGGACACGAAGTTAAACAGGATCAGTATCTACCCCAATGGATATGCCCTTCATGCTTGGCAACGGCAAAAATTGCATTTAATTTTAAGCGGCGACTAGAGAAGAGCCTTCAGTGGAATAAGGGTTCGTCGCAAGTTCCTCCAGAGGAAAACATAATCCCAAGCGAAAAGAGTGACAAGGATGGAGAGGTGGACAAACCTGTGAAATGCTCCCACTGCTCGAAAACCTATGTCAATAACTCCACTCTAAAGATACATCTACGCACTCATACGGGCGAGCGTCCTTTCAAATGTTCTCAGTGCACGAAAACCTTTTCCCAAAGCGCCAATCTAAAGTCTCACCTTCGCACTCATACGGGCGAACGACCATTCGAATGTTCCCATTGCTCTAAAACCTTTGGCGAAATAGGAAATCTTAAGTCTCACCTACGCACTCATACTGGAGAACGACCCTTTGAATGCTCCAACTGCTCGAAAATCTTTAGCACAATGGGCAATCTAAATAAACACCAAATCACTCATACTAGAGAACGACCCTTCAAATGTTCCCACTGCTCGAAAACCTTTGTCCAAAACCGCTGTCTAAAGAAGCACTTACTCATTCATACAAGCGACTCGGCGAATACTCCCACTGTTTGA
Protein Sequence: MEPQVAEQCRVCMSSLADGTKTNWRNIFTYSDAGLGGLWLIIEEVTGHEVKQDQYLPQWICPSCLATAKIAFNFKRRLEKSLQWNKGSSQVPPEENIIPSEKSDKDGEVDKPVKCSHCSKTYVNNSTLKIHLRTHTGERPFKCSQCTKTFSQSANLKSHLRTHTGERPFECSHCSKTFGEIGNLKSHLRTHTGERPFECSNCSKIFSTMGNLNKHQITHTRERPFKCSHCSKTFVQNRCLKKHLLIHTSDSANTPTV

Sequence clustering based on sequence similarity using MMseqs2