Lmom014082.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
RREB1
Assembly
GCA_018904225.1
Location
JAEIFT010000046.1:1125343-1134648[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.033 1.9 9.2 0.8 1 21 208 228 208 230 0.93
2 11 0.0027 0.16 12.6 0.1 1 21 240 260 240 261 0.94
3 11 5.9 3.3e+02 2.1 4.7 2 19 376 393 376 395 0.97
4 11 0.0077 0.43 11.2 0.1 1 23 509 531 509 531 0.97
5 11 1.1e-05 0.00064 20.1 0.7 1 23 541 563 541 563 0.99
6 11 0.00076 0.043 14.3 2.0 1 23 569 592 569 592 0.97
7 11 0.0027 0.15 12.6 2.0 1 23 783 806 783 806 0.95
8 11 7.9e-05 0.0045 17.4 0.3 2 23 1063 1084 1062 1084 0.97
9 11 0.13 7.5 7.3 6.3 1 23 1090 1113 1090 1113 0.97
10 11 0.0077 0.44 11.2 0.5 3 23 1292 1312 1290 1312 0.96
11 11 0.0012 0.069 13.7 4.8 1 23 1318 1340 1318 1340 0.99

Sequence Information

Coding Sequence
ATGTTGGCCACGCCACAAAAGCCCACAACAACAACAACAACAAACACACACCAGTCTGATATGGAACGCCCACGTAGAGACTCTACCACCTCAGAGTCCTCACTGGAGCATCTGGATCTCGGTCGCACACCAAAGAAGCTGAGCAATAACAATGGCTTAGCTCAGCCCACCTCAACGCCTCATGAGGTAACTGCAACGGCATCGCGCAAGCGCAAACTGCGTCAGCCACATCCGCCACATCCGTCTGCCGCATCTGAAGATGAGTTTGAGGAACAGCTGGAGCCTGTGGGCGCCGCCGCCAATACATTGCAGCGTCCGCGTCACAAACAGCGACGCAATGCCGCTGCCAGCGCCAGCATTGTCATGGACTACAGTTCCGGTGATGTCAATTCGTTGCGCAAGAAATTCCGTCTAAATCGCAGCACCCTTAATGGTGAACTCTCCGAATCCGGATTTGTGGATGGCAGCAGTGGCAGTGGCTATCTGTTGGGCAATCATACCACATCGGCCAGTGCCAGTGTGTTGGCCTCCAGTTCGGCCAGTTCGGGTGCCTCATCGCCACAGGGCCTGTGCCTGTCCAGCGCTGAATCTGGCATTGGTGCCGGCGATGATCATATGAAATATCTCTGCCCCATCTGTGAGGTGGTATCGGCCACGCCCCATGAATTCACCAATCATATACGATGCCACAATTATGCGAATGGCGATACCGAGAATTTTACCTGCCGCATTTGCTCCAAGGTTCTATCATCGGCCTCCTCTTTGGACAGACATGTGCTGAGCAGTAGCTCCCAAACCAACAACAATAGTCACAAGGCCACCAATAGGGAGGCGGGTAAACTCAAGACCAATATTAACAATAACATAATGGATGAAGAGGAGGAGGATCAGGATCAGGAGGAGGATCAGGAGGAGGAGGAGGATTTAGAGCAAGATGAAGTAGATGTGGCCCTGCCGCTGTCCATTACCAGCACACCAGATGTGGATACTCTACTGGCGGGTGCGGGTTCAGCCTCACCCGTGCCCAGCTTGGGTCTCAGCTGTCCGGCCTGTGGTGCCACAGATTTTGATACACTACCCGGTTTGTGTGCCCATTTGGATGCACAACATGGTGATATACCCGCCAAGTGTAGAGATTGTGAGGTGATCTATGCCACACATCGTCAACTGCAAAAGCATTGCTGTCGTGGAGGCGTTGCAGCGGCCGAGGAAGAGGAGGAGGCAGAGGCGGAGGCTGCTAGCCAACGCGATGATTTCTTCCAGCAACTGTACCTCAAGGGCAAGGGCCCCACCTCACCACCCTCACCCATTAAGCATGAGCCCGCGGATAGCAAAGATTTGGCCGATATACAGAGCATACTCAATATGACCAGCTCCAGTTGCACCTCCAACTTTTTGCGCAATTTTGAGCAATCGGTGAACACGCCCTGCTCCAGTCAATATAGTCTAGATGGACGTGATGGCGAGGAGGAGGCACAGGATGTGTTTACCTCCGAATTTCGTCGCATGAAATTGCGCGGTGAATTTCCCTGTAAATTGTGTACGGCGGTATTTCCCAATTTGCGCGCTCTGAAGGGTCACAATCGTGTACATTTGGGTGCAGTGGGTCCGGCGGGTCCATTTCGCTGTAATATGTGTCCCTATGCGGTGTGCGATAAGGCCGCCTTGGTGCGTCATATGCGCACACATAATGGCGATCGTCCGTATGAGTGTGCGGTGTGTAATTATGCTTTTACCACGAAGGCCAATTGTGAGCGTCATTTGAGGAATCGGCATGGTAAGACTAGTCGAGAGGAGGTTAAGCGTGCCATAGTGTATCATCCGGCTGAAGATGCCAGCTGTGATGAGAGCAGTAAATCACGTTTGGGTGAGGATTTGAATGAGCTGAGTTTTAGATCGGTAACGCCGCCGCCTCCAACGCCGGCGCAGGTAGAGAGCTCCTCCCAGCTGAAGCATATGTTAATGAAGGAAACGCCTAATCAAGCTCCAATACAGCAGCAGGTGCAGCCCGCTCTGAAGATACAAGTCAAAAGTTTGGATCAGCTGGTGGATAAACCCGTGTTGACGCCAGCCCTGGATCTTAGCATGGATTATATGCAACAATTGTTTCGCAACTTAATGTTCCAACAAACCTCAGCCTTTCCCTTCTTTGGCTTTCCCTTGAATCCACCCACCACAGCGATACAAGAAGCCAAAGCACCCGTTGCACTGCAGCAACAGCAACTTAGTCCAGCCAATCGTCCGGTTGGTGTGCCCGTACCCGCGGGTGGACCCGTCAAAATGGTCATCAAAAATGGTGTCCTAATGCCCAAACAAAAGCAGCGACGCTATCGCACCGAACGTCCCTTTGCCTGCGAGCATTGCTCGGCGAGATTTACCTTGCGTTCGAATATGGAGCGACATGTGAAGCAACAGCATCCACAGTTCTATGCCCAGCGACAGCGTAGTGGACATCATGTCATGCGTGGACGTGTGAAATATGCCATTTTGGCGCAACAATTGAAGGCACACAAGAATACGGATTTGTTGCAGCAAGCCCTGGTGCAGGGTTCCAGCAGTGTGGCACATAATCCGCTCATGAATTTTGCCTATAATACAAATCCGGCACAGGCCTTGGATGATGATGAGCCCAAATTGGTTATAGATGAGGATGAGGAGGAGTTTGAAGAGTTGGAGGAGGAGGAAGAGGAGGATGAAGAAGAGGCGGAGGCGGAGGAGCTAGAGGAGCAGCCTGCCTGCTCACCCACACCCATTGAGGCGGCCAAAAAGGTGGCCGAAACCATACTCGAGCAGGCCATTAAGGCGGGCAAACCCACTTCACCCGAACCCGCACAACCGCCTCCTCCTCCCCCCCAACCACACACCATGAAAACTTTGATTGCTCAGGCCGAATCTGTGGCCAAGTCTTTGAAAGAGGTGGCCAGCTCGCCCTTTAAGGATGAATCTCAGGATTTGGTGCCGGTGGCCAAATTGGTGGACAATGCCACCAGCAATCAGGTGAGCTTCAATAGCTATTTCCGTCCCAGCGATGTGGCCAATCATATGGAACAAAGCGATGAGGAGGGTCTGGTGGCCTCGGGCAGTGCCAGCGAGAGTAACAATTCGGGCACCGAAGATGTCACCTCCTCCAGTTCCAGCAGTGAGCCCAAAAAGAAGTCCGCCTATAGCCTGGCACCCAATCGTGTATCCTGTCCCTATTGCCAGCGCATGTTTCCCTGGAGCAGTTCATTGCGTCGCCATATCCTAACCCATACGGGTCAGAAACCCTTCAAGTGCTCGCACTGTCCCCTGTTGTTTACCACCAAAAGCAATTGCGATCGTCATTTGTTAAGGAAACATGGCAATGTGGAGTCCGCCATGTCCGTATATGTGCCCACCGAGGATGTCAGTGAACCCATACCCGTGCCCAAATCGGTGGAGGAAATAGAGCTGGAGGAGCAACGTCGTCGCAAGGAGGCGGAACGTCAGGCGGAGCAGGAGCGTATAAGAGAGCAGGAGCGGGAGCGGGAGCGTGAAAGGGAACGTGAGCAACTCATGCAACAACTGGCTGCAGCGGCTCAGCTGAGTCAGCAAATGAATGCAGCTGCTGCTGCTGCCGCCTCTCTAAATGACTCTGCAGGCGGAGATTTGCCCTACAAGTGTCATCTATGCGAGGGTTCCTTTGCCGAACGTTTGCAATGTTTGGATCATATTAAACAAACGCATGCCCATGACTTTGCCCTGCTCCTGGCCAAGGGAGCCATTGAAACCGAAGCCTTGGAGCCGCCTTTGAACGCTGTGTGCCCGCCCACTGCTGCTGCTGCCAACTCGGATGATGAGTCGGCAGTGGGTGTACGTGGTAAATATCCTGACTATAGCAATCGTAAGGTTATTTGTGCCTTTTGTGTGCGTCGTTTTTGGTCCACCGAGGATTTGCGTCGTCATATGCGCACCCATTCGGGTGAACGTCCTTTTCAGTGTGAGATTTGCTTACGTAAATTTACTTTAAAACATAGCATGTTACGTCACATGAAGAAGCACAGTGGACGCTCGCATAATGGTGAATTGCAGGGTTCGGATTGTTCCGATGATGAGCAGTTGACCACGCCGCCTGGCACTCCTTTACCCATTAATAACAACAACAATAATAATCACAACAACAACAACAACCACAATGCCAAGCTGGGTTTACGTTTGCCCAAGCTGCATGAGCTGCTGGATAAGGCCAATGAATGGCGCGCCAGTCGCCTGGGTGAGCACAAGGAGAATATGGGCGATGCAGCCACTGCGAGTACAGCCACGTCCACTTCGGCTGTGGTGGGTTCCGATTTGATAGGCAATCTGTTGGGCATCAGTGATCAGGGTATACTCAATAAGTTGCTGTCATCGGCCGATGAGGCGGCCAAATTGCTGGGCGTGGATAAGTAA
Protein Sequence
MLATPQKPTTTTTTNTHQSDMERPRRDSTTSESSLEHLDLGRTPKKLSNNNGLAQPTSTPHEVTATASRKRKLRQPHPPHPSAASEDEFEEQLEPVGAAANTLQRPRHKQRRNAAASASIVMDYSSGDVNSLRKKFRLNRSTLNGELSESGFVDGSSGSGYLLGNHTTSASASVLASSSASSGASSPQGLCLSSAESGIGAGDDHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLSSSSQTNNNSHKATNREAGKLKTNINNNIMDEEEEDQDQEEDQEEEEDLEQDEVDVALPLSITSTPDVDTLLAGAGSASPVPSLGLSCPACGATDFDTLPGLCAHLDAQHGDIPAKCRDCEVIYATHRQLQKHCCRGGVAAAEEEEEAEAEAASQRDDFFQQLYLKGKGPTSPPSPIKHEPADSKDLADIQSILNMTSSSCTSNFLRNFEQSVNTPCSSQYSLDGRDGEEEAQDVFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCDESSKSRLGEDLNELSFRSVTPPPPTPAQVESSSQLKHMLMKETPNQAPIQQQVQPALKIQVKSLDQLVDKPVLTPALDLSMDYMQQLFRNLMFQQTSAFPFFGFPLNPPTTAIQEAKAPVALQQQQLSPANRPVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRVKYAILAQQLKAHKNTDLLQQALVQGSSSVAHNPLMNFAYNTNPAQALDDDEPKLVIDEDEEEFEELEEEEEEDEEEAEAEELEEQPACSPTPIEAAKKVAETILEQAIKAGKPTSPEPAQPPPPPPQPHTMKTLIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRKEAERQAEQERIREQEREREREREREQLMQQLAAAAQLSQQMNAAAAAAASLNDSAGGDLPYKCHLCEGSFAERLQCLDHIKQTHAHDFALLLAKGAIETEALEPPLNAVCPPTAAAANSDDESAVGVRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGELQGSDCSDDEQLTTPPGTPLPINNNNNNNHNNNNNHNAKLGLRLPKLHELLDKANEWRASRLGEHKENMGDAATASTATSTSAVVGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-