Lmom011233.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000157.1:435521-438675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00016 0.0092 16.4 4.5 1 23 161 183 161 183 0.97 2 13 0.0025 0.14 12.7 3.1 1 23 220 243 220 243 0.96 3 13 0.00028 0.016 15.7 2.7 1 23 298 321 298 321 0.96 4 13 0.0019 0.11 13.1 0.2 2 23 374 395 373 395 0.97 5 13 4.8 2.7e+02 2.4 0.7 1 19 510 528 510 530 0.76 6 13 0.022 1.3 9.7 0.6 1 23 540 562 540 562 0.94 7 13 0.00018 0.01 16.3 0.5 1 23 569 592 569 592 0.96 8 13 0.00048 0.027 14.9 0.9 2 23 601 622 600 622 0.96 9 13 0.00049 0.028 14.9 0.9 2 21 649 668 648 672 0.90 10 13 0.00098 0.056 14.0 1.6 1 23 710 733 710 733 0.96 11 13 0.11 6.2 7.5 0.2 1 23 792 814 792 814 0.94 12 13 7.2e-05 0.0041 17.5 3.7 1 23 820 842 820 842 0.99 13 13 7.5e-06 0.00042 20.6 3.2 1 23 848 870 848 870 0.98
Sequence Information
- Coding Sequence
- ATGACCAGAACCTGCAGAATCTGCGCCAGCAGTGAGGGGCGATTTTGGATTGAAACGCCTGTGGAGAAATATGCAGATAAGACTTTCAATCAGTTGCTAGTGGAGCTAACACGGGTGGAGGTGACCATGTCGCAGGCAGACCAGCTGCCACCTTGGATATGTCGAAGTTGTGCACAGAAATTGCAGAATTCCTATGACTTTGTGGAGGGGTATGGCGAAAAAGAGGAGGAGGATGTGGACGACACCTGCCTGCGTGAGACACCCATTCAACTGTTGGAAATTGAAGGGGTGACCATCAAAATGGAGGAACCAGAACCAGCAGCTGCTGCTGCGGCGGCGGCCGCAACTGCACCCGATCCGCTGGTGCGCACACGTCTAGTCAAGCGTAGCATATACCATTATAGTGATACAGACGATGAGGATGATGTGCCACTAAAGCAGCGTTGCTTTGCGAAGCCTGGACTTGCTCAACTGAAGCAACACAAATGTAATCTCTGTAACAAATCGTTTCGATATATCACCAATCTGGTCAGGCACAAAAAGGAACATAATTCCGCTGAGGAGGTGGATCCTTTTTTGCATAGTGTAATCAAAAGTGCGGTGGCTGCTAGAGGCAATACAAAGGCGGACCCCGAGGAGGAGGAGGAGGATAACTACTATAAATGCGATCAGTGCGACAAATCCTACAAGTATATCATGCTGCTGGTCAAGCACAAGCATAAGGCTCATGGAGCAAGCCAAATGCCTGGTTCCAGCAGGCTCACACGTCCACGCCGAGGTGCAGTGAGTCCCGCCCAGCGACCTAAGCTTAGCACAGACACCCTAGTACACAGTCTCATCCAGGCTGTGGAGATCTCAGATGAGGATGGCAACTCCAGTTCGGATAACTATTACAAGTGCGATGAATGCGATAAATCCTACAAATATATAGTCAGTCTGATAAAGCACAAACATAAGGAACATTCCGATTTAGCCAAAGATGTGACGGCCAATGAAGATCAGCCTGGGCCCTCGACTTCCGCTTCGGCTACCTTTACCCAGCCAAAGGCCTCGCGAATCAATCGACGTGTTCAGGGCTTCGATTTGTATCGTTGTCAGCCCAATGGTTCCAAGGAGATTCAGTGCATGATTTGCCTGCGTCGCTTTGCCAAATTGGGCGAATTGCGTGCCCATCTCAAATATCATCCCAATGATTTTGATTTTCAAGCTCATGGTGAGCCAATTGAACGCATAGCCGAGGGCTTTTTCAAGACGGCCGTGGAGTCTACCGTGGAGGGTCTAAAGCGACGCATTCTCAATGATCTGAGAGAGGGCGTTTATGGACGCTACTATTCCATTACCAATCAGGCACGCTACGAGATGAGTCTGGACAGCTCGGATACGGATAGCGAAGGTGATGAAGCCGCCGAAGTGGTGTTGCGTCGTAGCTATGCCTGTGAGCTGTGTGACAAGCCACAGGCTAAATGGCCACGGAAATACCAACTTCATGAGCATCACAGACAATGTCATACCTGGATGGAGGCACCGTATGTATGTCGCCGTTGCGATTCTCGCTTTTTGAGTGAACAATTGCTGGAGCATCATACCAGTCAACTCTGTCAAAACACACTAAAGCGATTCATGTGCGATAAGTGTCCGCAGCGTTTCTTTTGGCGCAGGAATCTGCGGGCCCATCTGGTGGAGCACAAGGATAAGCAAGAGAACTACCCGTGCGACCAATGCCAACGCAGTTTCCAGGACAAAAGCGCCGTGACCAAGCACAAATTGATGGTACATTCGGATGGCAATGGTCAACTTTTACCCTGTCGCTGGTGCACTCGTGTGTTTTATCGGCCCGCTTTGCTGCACAAGCACGTTCAACGACATGGCTTTAGCGGTCAGGATTTACCTTTGGCCGAAACTTTGCTAGCGGATGCCGCCAAGCCCTTGGGACCCAAGACCATTCACTGCAAGCTCTGTGACATTCAGTTTGTCAGTTCGGCGGATTTGCGCCGTCATATGGCCCACATGGGTCATGAGTATCAGGCGGCCAATTATATGATCAGCACTGAGGCAGGTTTTGAACTGCAATTGGAGGACACAGATGACAGTGACGATGGGGAAGATGCTGGCAATGTCAGAAGATCCTATACCTGTGATCTCTGTCAGATGAGCTTCCGACGCCGGCGGGATATGAGTGAACATCAGTATTCCTTGCATACTTTTGATAAACTGCCGCATGCCTGCGAGCATTGCATATTCAAGAGTGTGGATAGGCTCATGCTGGAACATCATCTGCGGACTCAATGTTGCAACCAGGACAAAACATTCATTTGTTCGCATTATAAACATATACGGGACATGCATGTGGCCAAAAAGAATCCGGGCAAGAAATATTTGTGCTCGTTATGCGGCCTGGAGTCGCTTACACCCAACAAGTTAAGCATACATATGCGTCGTCACAATGGCGAGAAGCCGTTCAAATGCGATCTATGCGACATGCGTTTTACAGTCCATTACGAACTGAAGGTCCATCGTAGAAAACATACGGGCGAGCGTCCATATCAATGCACGTTCTGTGACAAGCATTTCGCAAGACCCGATAAATTGAGACGGCATGTCTATATGCATAGTGTCAAGCATTAA
- Protein Sequence
- MTRTCRICASSEGRFWIETPVEKYADKTFNQLLVELTRVEVTMSQADQLPPWICRSCAQKLQNSYDFVEGYGEKEEEDVDDTCLRETPIQLLEIEGVTIKMEEPEPAAAAAAAAATAPDPLVRTRLVKRSIYHYSDTDDEDDVPLKQRCFAKPGLAQLKQHKCNLCNKSFRYITNLVRHKKEHNSAEEVDPFLHSVIKSAVAARGNTKADPEEEEEDNYYKCDQCDKSYKYIMLLVKHKHKAHGASQMPGSSRLTRPRRGAVSPAQRPKLSTDTLVHSLIQAVEISDEDGNSSSDNYYKCDECDKSYKYIVSLIKHKHKEHSDLAKDVTANEDQPGPSTSASATFTQPKASRINRRVQGFDLYRCQPNGSKEIQCMICLRRFAKLGELRAHLKYHPNDFDFQAHGEPIERIAEGFFKTAVESTVEGLKRRILNDLREGVYGRYYSITNQARYEMSLDSSDTDSEGDEAAEVVLRRSYACELCDKPQAKWPRKYQLHEHHRQCHTWMEAPYVCRRCDSRFLSEQLLEHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKDKQENYPCDQCQRSFQDKSAVTKHKLMVHSDGNGQLLPCRWCTRVFYRPALLHKHVQRHGFSGQDLPLAETLLADAAKPLGPKTIHCKLCDIQFVSSADLRRHMAHMGHEYQAANYMISTEAGFELQLEDTDDSDDGEDAGNVRRSYTCDLCQMSFRRRRDMSEHQYSLHTFDKLPHACEHCIFKSVDRLMLEHHLRTQCCNQDKTFICSHYKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCDKHFARPDKLRRHVYMHSVKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914715;
- 90% Identity
- -
- 80% Identity
- -