Lmom015256.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- Znf48
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000125.1:231421-232678[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.7e-06 9.5e-05 22.7 1.8 2 23 7 28 6 28 0.96 2 9 2.1e-05 0.0012 19.2 1.7 1 23 34 57 34 57 0.96 3 9 0.00026 0.015 15.8 1.6 1 23 141 163 141 163 0.98 4 9 0.00058 0.033 14.7 2.5 1 23 169 192 169 192 0.97 5 9 0.00082 0.046 14.2 5.0 1 23 226 248 226 248 0.99 6 9 7.7e-06 0.00044 20.6 6.9 1 23 264 286 264 286 0.97 7 9 1.7e-05 0.00095 19.5 1.6 1 23 292 314 292 314 0.97 8 9 5.4e-05 0.003 17.9 0.4 2 23 323 344 322 344 0.96 9 9 0.00015 0.0083 16.6 1.5 1 22 350 371 350 374 0.92
Sequence Information
- Coding Sequence
- ATGTCTATAAATCAGCTCACTTGTGAAATTTGTGGCAAACATTTTACCAAACCTGCCCACCTTAGCCGCCATCAAGTGGTACACACCAAAATGAAATCCTTTGCTTGTGCTATGTGCTCCAGTTCATTTACACAAAAGAGCTCACTACAGCGTCATCAGCTTAAGAAACATGCTCCGCCTGTGGCTGGGGACCCAGTGCCTCTCTCTCAATCCGTGGCTCAAGAGGCTCTAGCCGCGCTACGTAACTTCCAAAGTGGCTTGCAACAAGCTGCCTCTTATATAAGCAGCCCTCCAGTCACTCTAGAGGTACAGCCCATGGTTAGTCAACTGGTGGGACTTAGGGACAAATTAAATCCAGCCCATGAAGCTAAAGTCGTGCTCACCCAGAGAATACAACGTGCTGGCCGGGGTAAATGCTATTATGTTTGTGAATTCTGTTCCAAGGAATTTCTGAAAAGCTACGATTTGATCAGACACCGCCGTAGCCACACCAAGGAGAAGCCTTATGCCTGCCGGCAATGCCTCAAGTATTTTACCACCCAAAACAAATTGAATGAGCACCAAAAACGTTTGCACTCTACGAGGAAACCCCCAAGGAAACCTCTTGCTCCGAAAGATCAGTCTCTGGAGCAACTAAAGGCTTTAGTGCCGCAGCCCTTAATCATAAGTAGAAGCTATAAATGTGTTTATTGTCAACGAGCATTTGCACGCAAGTTCAATTGTCGTAGTCACATGTTGAGGCACCTCAACCAGCTGTTAAATGGAACAGTTGCTGCTTCCAAGAGCACCCACAATTGTCAGCACTGCAACAAAACCTTTAAAAGGTCCAATGATCTCAGTCGACACTTGCTTACCCACTCCAAAGTCAAATTGCACTCTTGCACACTCTGCCCGCAGGCATTCTCTTTGAAATCCTCACTTTCACGGCACTTGCTCACCCATCAGACCACCTCACGTCCAACACTCAATTGCCAGGTGTGTGGAAAATCTTTTCAAGCCCAAACCTCGCTGAATCTTCATTTACGTCTACATACAGGCGAGCGACCTTTTAGCTGTGAGATTTGCCAACAAACTTTTCGCACTTCTGGACATCGTTTGGAGCACATGCGTGCGGAAAGACATCAATTGAAACTTTCGTTATAA
- Protein Sequence
- MSINQLTCEICGKHFTKPAHLSRHQVVHTKMKSFACAMCSSSFTQKSSLQRHQLKKHAPPVAGDPVPLSQSVAQEALAALRNFQSGLQQAASYISSPPVTLEVQPMVSQLVGLRDKLNPAHEAKVVLTQRIQRAGRGKCYYVCEFCSKEFLKSYDLIRHRRSHTKEKPYACRQCLKYFTTQNKLNEHQKRLHSTRKPPRKPLAPKDQSLEQLKALVPQPLIISRSYKCVYCQRAFARKFNCRSHMLRHLNQLLNGTVAASKSTHNCQHCNKTFKRSNDLSRHLLTHSKVKLHSCTLCPQAFSLKSSLSRHLLTHQTTSRPTLNCQVCGKSFQAQTSLNLHLRLHTGERPFSCEICQQTFRTSGHRLEHMRAERHQLKLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917446;
- 90% Identity
- -
- 80% Identity
- -