Lmom012891.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
-
Assembly
GCA_018904225.1
Location
JAEIFT010000432.1:206586-211789[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.37 21 5.9 0.1 9 23 163 177 161 177 0.89
2 10 0.0036 0.2 12.2 3.3 5 23 187 205 185 205 0.96
3 10 5.5e-05 0.0031 17.9 6.6 1 23 350 372 350 372 0.99
4 10 5.1e-06 0.00029 21.2 1.8 1 23 378 400 378 400 0.99
5 10 6.9e-05 0.0039 17.6 8.7 1 23 406 428 406 428 0.99
6 10 4.9e-07 2.8e-05 24.4 1.8 1 23 434 456 434 456 0.97
7 10 0.00013 0.0071 16.8 8.2 1 23 462 484 462 484 0.99
8 10 5e-06 0.00028 21.2 3.8 1 23 490 512 490 512 0.99
9 10 0.00014 0.0078 16.7 4.8 1 23 518 540 518 540 0.99
10 10 3.9e-05 0.0022 18.4 1.2 1 21 546 566 546 567 0.96

Sequence Information

Coding Sequence
ATGGCCAGCAGATCAAAGGTGCCAATTGTGGCCGAGCAATGCCGCGTTTGCATGTCCAATTTGGCAGATGATACCACTAACAATTGGCGAAATATATTCTCAGACTCGGAAGCGGACGAAGACGGCTTGATGTATATATTGGAAGAGGTGACGGGACGCGTGGTTAAATCTGAAGAAGATCTACCTGAAAGGATATGTCCTACCTGCTTGACAGCGGCAACGACTGCTTTTAATTTCAAGCAACGATTTGAAACGAGTTTGAAGAGTCTACAGAAGATGAAGCAGAACAAATCCGCATTAGTTTTAAAAGAAGTGACCAATAAAAGTGAGGAAAGCAATGAGGAGAAAATGGAATCGCTGACGGGAGACGGCAGCGTAAAGAGCGAAGAGGAAGAGTTTGAATTACTCACTTGTAGCAGCGAAGAAGAGAGCGAAAGGAATGGGGAGGACTCTAAGTGCGAAGAGCGATCTAATACTGTCGAGCAATCCCTGAAAGATTCTTACTGCCTGGAGAAACACCTACGCTCTCATACTGACGAACGACCCTTTGAATCTACCCACTGCTCCAAGACTTTTGCTTATAAAATCAATTTAAAGGATCACCTACACACTCATACGGGTAATCATTCATTGAAAGAAACGCAAGCTCTGGAAATAATCGAAGAAATGGCTTGCAGTTTAAAGGAGCCAAATGTGGCCGAGCAATGCCGCGTCTGTATGTCCAGTTTGGCAGAGGAGTGGCGAAATATATTCACCGACTCGGAAGCGGAAGAAGGCGGTTTAATGTTTATATTACAGGAGGTTACTGGACGCCAGGTTATACATGATAAGGAACTACCTGAAAGGATATGCATTTCATGCTTTTCAGAGGCAAAAACGGCATTTAATTTTAAGCAACGACTTGAGAAGAGTCTTCAGTTGATGAAGGAGGAGTGTACACAGTCCATCAAAAGTGAACTCGAAGAGTTTGAATCTGTTACTGGATACAGCAGCGAGGAGAGCGAACGGCAAGAGCTAGAAACTTTCCGTCATACCAACGAACGACCCTTCAAATGTTCCCAATGCTCGAAGTCTTATACCCATAAATTCCGTCTAAAGGTTCACATGCGCTCTCATACTGGCGAGCGACCCTACAAATGTTCGCAGTGCCCAAAAACCTTTTACAAACTAGGCACTCTAAAGGATCACCTAAACACTCATAGTGGGGAACGACCCTTTGAATGTACTCACTGCCCGAAGACTTTTACCCATCAATGCCGACTTACGGATCACTTACGCACTCATACTGGCGAGCGACCCTACATTTGTTCATATTGCTCGAAAAGCTTTACCCAAAAATCCTATTTAAATGCTCACCTTCTCTATCATACTGGAGAGCGGCTCTTTCAATGTACATTTTGCACGAAAACCTTTACCCAAAAATGCTATCTAAAGTATCACCTACGCTCTCATACTGGCGAGCGACCCTTTGAATGTTCACATTGCTCGAAATACTTTAACCAACGTGGCCAACTGCAGGATCACCTACGCACTCATACTGGCGAGCGACCTTACAAATGTACGGAGTGTTTGAAAACTTTTAAAAAACTGTGCACTCTAAAGGATCATCTACGCATTCATACGGGCGAGCGACCCTTTGAATGTTCCCATTGCTCGAAAACGTTCACCCTAAATTGGGGCCTTAATCGCCACCTGCGAAATTGCTTGAAGAAAAAATCGTAA
Protein Sequence
MASRSKVPIVAEQCRVCMSNLADDTTNNWRNIFSDSEADEDGLMYILEEVTGRVVKSEEDLPERICPTCLTAATTAFNFKQRFETSLKSLQKMKQNKSALVLKEVTNKSEESNEEKMESLTGDGSVKSEEEEFELLTCSSEEESERNGEDSKCEERSNTVEQSLKDSYCLEKHLRSHTDERPFESTHCSKTFAYKINLKDHLHTHTGNHSLKETQALEIIEEMACSLKEPNVAEQCRVCMSSLAEEWRNIFTDSEAEEGGLMFILQEVTGRQVIHDKELPERICISCFSEAKTAFNFKQRLEKSLQLMKEECTQSIKSELEEFESVTGYSSEESERQELETFRHTNERPFKCSQCSKSYTHKFRLKVHMRSHTGERPYKCSQCPKTFYKLGTLKDHLNTHSGERPFECTHCPKTFTHQCRLTDHLRTHTGERPYICSYCSKSFTQKSYLNAHLLYHTGERLFQCTFCTKTFTQKCYLKYHLRSHTGERPFECSHCSKYFNQRGQLQDHLRTHTGERPYKCTECLKTFKKLCTLKDHLRIHTGERPFECSHCSKTFTLNWGLNRHLRNCLKKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-