Lmom011538.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- su(Hw)
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000223.1:71639-73413[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00058 0.033 14.7 2.1 1 20 7 26 7 28 0.94 2 12 0.056 3.2 8.5 0.2 7 23 59 76 59 76 0.92 3 12 0.017 0.99 10.0 0.0 1 23 82 104 82 104 0.95 4 12 4.1e-07 2.3e-05 24.6 2.5 1 21 111 131 111 132 0.95 5 12 3.3e-06 0.00019 21.7 1.0 2 23 144 165 143 165 0.96 6 12 5.7e-05 0.0032 17.9 5.3 1 23 176 198 176 198 0.99 7 12 4.4e-05 0.0025 18.2 0.9 1 23 204 226 204 226 0.97 8 12 5.1e-06 0.00029 21.2 0.7 1 23 232 254 232 254 0.98 9 12 0.0001 0.0058 17.1 1.6 1 23 260 282 260 282 0.95 10 12 0.00019 0.011 16.2 1.0 1 23 286 308 286 308 0.97 11 12 0.0014 0.082 13.4 0.2 1 21 316 336 316 340 0.89 12 12 9.4e-06 0.00054 20.3 0.4 3 23 360 381 358 381 0.96
Sequence Information
- Coding Sequence
- ATGAAGGAGATTGTGGAGCATATTTGTGGTAAATGCTACAAGACATTCCGTCGTGTCAAGAGTCTGAAGAAGCATTTAGAATTCTGTCGCTATGACAGTGGCTATCACCTGCGCAAGGCGGACATCGAGAGCTATGACACCGTTTCATCTGGGCCACATCAACTGTCCCGATTGCCCAAGTCCTTTAAGACGCAGACCAGCTATGAACGTCATATATTCATCACTCACTCCGAGTTCTATGATTATCCCTGCTCCATTTGCAATGCCAATTTGCGTAGTGCGGCTTTGTTGAAGCTGCATGAGGAACAGCATAAGAGTAGGGGCAAGCCCTTTGCCTGTAAGATTTGTGGCAAGGATTTTACGCGCTCCTATCATTTGAAGCGGCATCAGAAGTATTCCTCCTGTTCGGCCAATGAGAATGATACCATGAGCTGTAAGGTTTGCGATCGTGTGTTTTATCGCTTGGACAATTTGCGTTCGCATTTGAAGCAACATTTGGGCACTCATGTGGTGAAGAAGCCGGAGTATATGTGTCATGTGTGCAAGAATTGCTTTTATAGCTTGTCCACGCTTAACATACACATACGCACCCATACGGGTGAGAAACCCTTTGATTGCGATTTGTGTGATAAGAAGTTTTCTGCTTTGGTGGCCCTTAAAAAGCATCGACGCTATCACACGGGCGAGAAACCCTACAGTTGCACTGTGTGCAATCAATCCTTTGCGGTCAAAGAAGTGCTCAATCGGCACATGAAACGCCACACGGGTGAACGTCCGCACAAATGTATTGAATGCGGCAAAAGCTTCATACAGGCCACTCAACTGCGCACGCATTCCAAGGTTCATGTGCGTCCCTATACCTGCGATTTGTGCGATGACAAGTTCAAGACCGAAAAACAACTCGAGCGTCATGTCAAGGATCACTCGCGCCAAAAGCGTACCACATTCAGTTGCATCCAATGCAAGCGTAGCTTTCGTACTGCTGGTCTACTCAAGGATCATATGGACGCGGGCGAACATACGCCCAAACCAGAACGCGCCAAGCGCTCAAGCATCAGAATTATAGGACGCACAGATTGTGCCATTTGTGACAAAAATTTTGACAGCACCGATACCCTGCGCAAACACATACGCAGTGTTCATGAGTGTGATCCGGATGACATTTTTGGCGTGGAGCCCACCCTCCAAGCGCGGCGAACGGCGCAGAAGGTCATCATAGAGGAAGAGGTGGACGATGTGGCCCTTAACACCTCGGCTGGTTCATTGATATCCAGCCAAACCGATGGCAATGGTGTGGTGGTGCGTGAATTTCTGGTTGATGAGGATGATGGCACCACTGCCCAGACCATTATGCTGGAGAATGAAACCTACACCATATTGCCCTGGAGGGGTCATTGA
- Protein Sequence
- MKEIVEHICGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADIESYDTVSSGPHQLSRLPKSFKTQTSYERHIFITHSEFYDYPCSICNANLRSAALLKLHEEQHKSRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRSHLKQHLGTHVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQSFAVKEVLNRHMKRHTGERPHKCIECGKSFIQATQLRTHSKVHVRPYTCDLCDDKFKTEKQLERHVKDHSRQKRTTFSCIQCKRSFRTAGLLKDHMDAGEHTPKPERAKRSSIRIIGRTDCAICDKNFDSTDTLRKHIRSVHECDPDDIFGVEPTLQARRTAQKVIIEEEVDDVALNTSAGSLISSQTDGNGVVVREFLVDEDDGTTAQTIMLENETYTILPWRGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -