Lmom011545.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- su(Hw)
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000223.1:114651-117621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.067 13.7 2.1 1 20 186 205 186 207 0.94 2 12 3.1e-06 0.00018 21.8 0.4 3 23 258 279 256 279 0.93 3 12 0.036 2 9.1 0.0 1 23 285 307 285 307 0.95 4 12 8.4e-07 4.8e-05 23.6 2.5 1 21 314 334 314 335 0.95 5 12 6.9e-06 0.00039 20.7 1.0 2 23 347 368 346 368 0.96 6 12 0.00012 0.0066 16.9 5.3 1 23 379 401 379 401 0.99 7 12 9e-05 0.0051 17.2 0.9 1 23 407 429 407 429 0.97 8 12 1e-05 0.00059 20.2 0.7 1 23 435 457 435 457 0.98 9 12 0.00021 0.012 16.1 1.6 1 23 463 485 463 485 0.95 10 12 0.0004 0.023 15.2 1.0 1 23 489 511 489 511 0.97 11 12 0.003 0.17 12.5 0.2 1 21 519 539 519 543 0.89 12 12 1.9e-05 0.0011 19.3 0.4 3 23 563 584 561 584 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCCTCCAAGGAGGAGAAAAAGACGGACAAGAAACCTCCTGCTAAGCGCATGAAACTAATTAAGGATTCGGCTCCATCCGGATCTACGCCCAGTTTGAAACCAGAGAAGGAAAAGCCCAACAAAATACTCAACGATGCGCCCGTGGCCACGCCCCCCAAAGGGGACACACGCGTGAAGATATTAAATGAGAAGCGTATTACTCCCGCCAATGTGCCCGTGGAGACGACCAAGATTAGGACCATTCCCGCCAAGAAACAGCAATCAATGGATCACTATGTGCTCCAGGCGGTTAAAAGTGAGAATAGCAAAGCGGAAGCCACCACCACCAATGTGGTTATAGCAGCTACCAATGACGATGATATAGATGATGAGGATGATACCATTGCCATTATACTGGCCGATGATGAGGAAATGGACCATGCTGCAGCTGTCTCTGACAATGGTGCCGAAATAGTGGTATCCGGCGAAGAGGAAGACGATGAGGAAGATGAAGAGGAGGCCGCCGCCGCTGGCCGGATTATTAATCCCACCATGAAGGAGATTGTGGAGCATATTTGTGGTAAATGCTACAAGACATTCCGTCGTGTCAAGAGTCTGAAGAAGCATTTAGAATTCTGTCGCTATGACAGTGGCTATCACCTGCGCAAGGCGGACATGTTGAAGAATCTGGAGAAGATTGAGAAAGATGCGGTGGTAATGGAGAAGAAGGATATTTGCTTCTGCTGCAGCGAGAGCTATGACACCTTTCATCTGGGCCACATCAACTGTCCCGATTGCCCCAAGTCCTTTAAGACTCAGACCAGCTATGAACGTCATATATTCATCACTCACTCCGAGTTCTATGATTATCCCTGCTCCATTTGCAATGCCAATTTGCGTAGTGCGGCTTTGTTGAAGCTGCATGAGGAACAGCATAAGAGTAGGGGCAAGCCCTTTGCCTGTAAGATTTGTGGCAAGGATTTTACGCGCTCCTATCATTTGAAGCGGCATCAGAAGTATTCCTCCTGTTCGGCCAATGAGAATGATACCATGAGCTGTAAGGTTTGCGATCGTGTGTTTTATCGCTTGGACAATTTGCGTTCGCATCTGAAGCAGCATTTGGGCACTCATGTGGTGAAGAAGCCGGAGTATATGTGTCATGTGTGCAAGAATTGCTTTTATAGCTTGTCCACACTTAACATACACATACGCACCCACACGGGTGAGAAGCCCTTCGATTGCGATTTGTGTGATAAAAAGTTTTCGGCTTTGGTGGCCCTTAAAAAGCATCGACGCTATCACACGGGCGAGAAACCCTACAGTTGCACTGTGTGCAATCAATCCTTTGCGGTCAAAGAAGTGCTCAATCGGCACATGAAACGCCACACGGGTGAACGTCCGCACAAATGTATTGAATGCGGCAAAAGCTTCATACAGGCCACTCAACTGCGCACGCATTCCAAGGTCCATGTGCGTCCCTATACCTGCGATTTGTGCGATGACAAGTTCAAGACCGAAAAACAACTCGAGCGTCATGTCAAGGATCACTCGCGCCAGAAGCGTACCACATTCAGTTGCATCCAATGCAAGCGTAGCTTTCGTACTGCTGGACTACTCAAGGATCATATGGACGCGGGCGAACATACGCCCAAACCAGAACGCGCCAAGCGCTCAAGCATCAGAATTATAGGACGCACAGATTGTGCCATTTGTGACAAAAATTTCGACAGCACCGATACCTTGCGCAAACACATACGCAGTGTTCATGAGTGTGATCCGGATGACATTTTCGGCGTGGAGCCACCCTCCAAGCGTGGCAAACGAGCGCAGAAGGTCATCATAGAGGAAGAGGTGGACGATGTGGCCCTTAACACCTCGGCTGGTTCATTGATATCCAGCCAAACCGATGGCAATGGTGTGGTGGTGCGTGAATTTCTGGTGGACGAGGATGATGGCACCACTGCCCAGACCATTATGCTGGAGAATGAAACCTACACCATATTGCCCCTGGAGGGGGTCATTGAAAGCGAACCGCAGCCAGCAGCCGTTAAGCCGCAGTCCAAAGAGAAGACACAGCAACAGGTATCACCTGTGGTTAAGAAGGAGCAGCGCAAATCTTTGGCAGCCAGTTTGGCTGCTGCCATAGCCGATAATCTGGAAGAAGAGGAGTTCAATGGCGAAGTTTTAACCGAAGATGATTTGAAACTAAAGGCAAATGTGGCCAAGTTGATTGATATGCTGGTAGATCCACCCATTTTAAAGAAATACGGCTGGCCCAACACCTCCGAGGAGACGGTGCTGTGCAAAGTGATTGAGAATTGTGGCCACGATCTGACCAAAGGTGGCGAGAACTATGCCGAACTGGACTATGGCAGCCGCATGCGTGAATATTGCAAACTATTGTTCACGGTGGTCATACACAATGATTCCATCAAGGCATTGCTTAACAATTTCCCCATAGACGATGTGATTGAATATGTGCTGGGCGATGAGGACCAGGATAGCAATGACAAAGATGATACCATCGATGTGGACGATGACGAGGAGGCCGATGAGTCGGATGACAAGGAGGAGGAGGCGGCGGCGGCGGAGGAAGTTAACTAA
- Protein Sequence
- MSASKEEKKTDKKPPAKRMKLIKDSAPSGSTPSLKPEKEKPNKILNDAPVATPPKGDTRVKILNEKRITPANVPVETTKIRTIPAKKQQSMDHYVLQAVKSENSKAEATTTNVVIAATNDDDIDDEDDTIAIILADDEEMDHAAAVSDNGAEIVVSGEEEDDEEDEEEAAAAGRIINPTMKEIVEHICGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFYDYPCSICNANLRSAALLKLHEEQHKSRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRSHLKQHLGTHVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQSFAVKEVLNRHMKRHTGERPHKCIECGKSFIQATQLRTHSKVHVRPYTCDLCDDKFKTEKQLERHVKDHSRQKRTTFSCIQCKRSFRTAGLLKDHMDAGEHTPKPERAKRSSIRIIGRTDCAICDKNFDSTDTLRKHIRSVHECDPDDIFGVEPPSKRGKRAQKVIIEEEVDDVALNTSAGSLISSQTDGNGVVVREFLVDEDDGTTAQTIMLENETYTILPLEGVIESEPQPAAVKPQSKEKTQQQVSPVVKKEQRKSLAASLAAAIADNLEEEEFNGEVLTEDDLKLKANVAKLIDMLVDPPILKKYGWPNTSEETVLCKVIENCGHDLTKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKALLNNFPIDDVIEYVLGDEDQDSNDKDDTIDVDDDEEADESDDKEEEAAAAEEVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916434;
- 90% Identity
- -
- 80% Identity
- -