Lmom014792.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
-
Assembly
GCA_018904225.1
Location
JAEIFT010000124.1:220106-222829[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-06 9.4e-05 22.7 2.0 1 23 141 163 141 163 0.98
2 16 0.11 6.5 7.5 0.1 2 23 195 216 194 216 0.95
3 16 0.00094 0.053 14.0 1.2 1 23 300 323 300 323 0.95
4 16 0.067 3.8 8.2 0.5 1 19 330 348 330 351 0.93
5 16 0.076 4.3 8.0 6.2 1 23 360 382 360 382 0.95
6 16 1e-05 0.00059 20.2 0.8 1 23 389 412 389 412 0.97
7 16 0.00012 0.0069 16.8 1.4 2 23 420 441 419 441 0.97
8 16 0.00064 0.036 14.6 0.2 2 23 468 491 467 491 0.91
9 16 0.00057 0.032 14.7 3.6 1 23 524 547 524 547 0.98
10 16 0.0086 0.49 11.0 3.3 1 23 584 607 584 607 0.95
11 16 6.9e-05 0.0039 17.6 0.5 2 23 624 646 623 646 0.94
12 16 0.00067 0.038 14.5 1.2 1 23 660 682 660 682 0.95
13 16 8.8e-05 0.005 17.3 0.4 1 23 688 710 688 710 0.99
14 16 3.7e-07 2.1e-05 24.8 2.5 1 23 716 738 716 738 0.98
15 16 0.00023 0.013 16.0 7.0 1 23 744 766 744 766 0.97
16 16 3.4e-05 0.002 18.5 0.6 1 23 772 796 772 796 0.90

Sequence Information

Coding Sequence
ATGAAACTGCCAGTCGTGTGTCGCACTTGCGATGCAACTGTGTGCAAACTGTTTAATCTGGACACGCCCAGCAAGAAGTATCCAAACAAATCGCTGGCGCATATGCTCAGCGAGCTGACCAATCTTAATCTTAATGTACCCTCCGACCAGAGCTGGCCACAAAGCCTGTGCTCCAGTTGCTCCAAGAAACTGTTCGATTGTTTACTAGAGGCGCCCATGGAACTATGTGCCGAGCAGCATGTGGAGGTTAAAATGGAAATGGAAGATGTGGCAGAAAATAAGCCTATAGATATCAAGAGTTCCGTTGATCCCTTAATAAAGCTGAAGGAAATTAAGCAGGAGGACTCCTCAGAAGACGAATCCATAGATGCTGGCACGGATGACGAAGATTTCTTGAAAGATTGTAAGCAAAAACCTAAACATCAGTGCACCGAGTGCACAAAAATCTTTAATCGTGCCGGAAATTTAAAGCAGCATCTTAAAGTCCATGCAAATCCCAAACCCCCGGCCAGTATCAGCGAGCACAAGAAGGCCAAGGCCATAGATGTAAATCTGTGCAAGCCTCATGGTTATAAGCTCATAGAGTGCATGATCTGTCAGGGACAATACAATAAAATAGCTGATCTTCGCCGTCATTTAAAGGAGCATCCGGAAATTGTAACACTGACTGGACGTCCCAATATGGAGCTGCAGGAGCTGGCCGAACTCTTTTATCCCGATGCCAAAAATGCTAGCGAAGAGCAATTAAAGCAATTAATACGCAAGGATTTGTCCAGTGGCAACTATCAACGTTTCTATTCCATAACCAATCAATCGGGCTATGAAATGGATTTGGATAGCTCGGAAACGGAGAGTGAACCAGAAGCGGAAGATGAACAGCTAAGTTCCCCTGTCAAATACAAGTGTGAACTATGCCAGCAGGGATATCCAAGAAAGTATCAACTGTATGAACATCAAAGTCAGTCACATGCCTGGCTAGAGGCTCCTCATGTGTGTGGACGCTGTGATGCGAGATTTGTTAGCCTGCAGCTGTTAAGACATCACAATGAGTCACAGTGTCGCAATGCACAAAAACGTTTCCTGTGCCACAAATGTCCGCTACGTTTTCGTTGGAAACACAATCTCAGGTCGCATTTTCGAGAGCATCGAATTACGAACCAAATCTATGAGTGTACGGATTGCAAGCGTGTATTTGATAAAAAGAAATCCCTAACTGTCCATTTGCTCAGTGTACATGCCGAGGAATCTAATTTAATGCCTTGCCAGTGGTGCAGTCGAAAGTTTTATCGCCGTGACTATTTGGTGAAGCATTTGAAACGTCATGGCTTACGTGAGCAGGATATACCGCTGGCTGAAACCTTAATAGCCGCCACCTCCAAGCCACATGGAGCTAAAAGCATTTATTGTAAAATTTGTAATCTACAATTTGAACGCATTCGGGAGCTACGTGCTCACATGCAAATGGAGCTACATAAGAACTATTCCATAACAAATGCTGCTGGATTTGAACTACAGCTGGACGATTCAGAGACAGAGGATGAAATGATGGGTTTGGTTAGTCGTTTGTTGTACAAATGTGAACTATGTAATGTTCAGTGTCGGCGTAAATATGAAATGATTCAGCATCAGCGTACCATGCATTCGTTTGATCAATTGCCGCATGAGTGTGACAAGTGCATCTTCAAGTGTGTGTCCCAGAGCATTCTAGATCATCATCGTCTGGTGCAATGTGAGAGTCAGGAGAAAAAGTTTTCGTGCAGTCACTGCAGCTACAAATTCAAGTGGCCCGAGAATCTAGAACAACACATACACCTAATGCATGGCCAGCGAACTAATACAAGCGACCACAAAGATGACCTTTCTCTACTCCCTTGTCCTCATTGTGATCGCACTTATCAACTGAAATCCTGGCTTAACAATCATATACGTGATGTTCATGTGAATGGCGATCGTAAGCGTAAGGAGGCGCTTAAACAATTCCTTTGCTCGCTATGTGGTTGCGAAACCAAATCAGCCGCCAGCCTGGTAACCCATATGCGTCGTCATACCGGCGAGAAGCCATTTAAATGTGATCTATGCGAAGCTGCCTTTCCCCGACGCTCGGATATGTTAACACATCGTCGCATGCATACGGGCGAGAAGAACTTCCATTGTACGGTCTGTGGCAAAGATTTTGCTCGCTCCGATAAGCTAAGGAGGCATATGTTGACGCACAGTGGTTTGAGACCGCACAAGTGCAACTACTGCGATAAGAGCTATAGACATACCAAGGATTTGAAACTGCATTTGCAGCAGCATACGGGAGAGTGTCCCTTTATATGTGGCACTTGTGGCGAACGTTTTATACAGAGCAGCACACTGGAGAAGCATCGCATGATGCGACGACATTTTGATGAAGTGGAAGTGGCACAAAATTAG
Protein Sequence
MKLPVVCRTCDATVCKLFNLDTPSKKYPNKSLAHMLSELTNLNLNVPSDQSWPQSLCSSCSKKLFDCLLEAPMELCAEQHVEVKMEMEDVAENKPIDIKSSVDPLIKLKEIKQEDSSEDESIDAGTDDEDFLKDCKQKPKHQCTECTKIFNRAGNLKQHLKVHANPKPPASISEHKKAKAIDVNLCKPHGYKLIECMICQGQYNKIADLRRHLKEHPEIVTLTGRPNMELQELAELFYPDAKNASEEQLKQLIRKDLSSGNYQRFYSITNQSGYEMDLDSSETESEPEAEDEQLSSPVKYKCELCQQGYPRKYQLYEHQSQSHAWLEAPHVCGRCDARFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLRSHFREHRITNQIYECTDCKRVFDKKKSLTVHLLSVHAEESNLMPCQWCSRKFYRRDYLVKHLKRHGLREQDIPLAETLIAATSKPHGAKSIYCKICNLQFERIRELRAHMQMELHKNYSITNAAGFELQLDDSETEDEMMGLVSRLLYKCELCNVQCRRKYEMIQHQRTMHSFDQLPHECDKCIFKCVSQSILDHHRLVQCESQEKKFSCSHCSYKFKWPENLEQHIHLMHGQRTNTSDHKDDLSLLPCPHCDRTYQLKSWLNNHIRDVHVNGDRKRKEALKQFLCSLCGCETKSAASLVTHMRRHTGEKPFKCDLCEAAFPRRSDMLTHRRMHTGEKNFHCTVCGKDFARSDKLRRHMLTHSGLRPHKCNYCDKSYRHTKDLKLHLQQHTGECPFICGTCGERFIQSSTLEKHRMMRRHFDEVEVAQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-