Lmom014793.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
-
Assembly
GCA_018904225.1
Location
JAEIFT010000124.1:223390-226245[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.4e-07 1.3e-05 25.4 1.5 1 23 203 225 203 225 0.98
2 16 0.043 2.4 8.8 0.2 2 23 257 278 256 278 0.95
3 16 0.00046 0.026 15.0 0.7 1 23 356 379 356 379 0.95
4 16 0.064 3.6 8.3 0.5 1 19 386 404 386 407 0.92
5 16 0.0089 0.5 11.0 2.3 1 23 416 438 416 438 0.97
6 16 0.0012 0.066 13.7 5.1 1 23 445 468 445 468 0.93
7 16 6.7e-05 0.0038 17.6 3.1 2 23 476 497 475 497 0.96
8 16 0.0023 0.13 12.8 0.1 2 21 524 543 523 544 0.94
9 16 0.0018 0.1 13.1 2.3 1 23 592 615 592 615 0.98
10 16 0.023 1.3 9.7 2.0 1 23 652 675 652 675 0.96
11 16 4.4e-05 0.0025 18.2 1.7 2 23 696 718 695 718 0.94
12 16 0.00066 0.037 14.5 2.0 1 23 732 754 732 754 0.95
13 16 0.0002 0.011 16.1 0.8 1 23 760 782 760 782 0.99
14 16 5.7e-07 3.2e-05 24.2 1.8 1 23 788 810 788 810 0.98
15 16 7.4e-05 0.0042 17.5 2.3 1 23 816 838 816 838 0.96
16 16 3.8e-05 0.0022 18.4 0.6 1 23 844 868 844 868 0.90

Sequence Information

Coding Sequence
ATGAAACTGCCAGTTGTCTGTCGCACTTGCAATGCAAGTGCCAGGGGGGCGGGCAAACTGTTAAATCTCGACACCATCAGCAAAAAGTATCCAGACAAATCCCTGGCGCATATGCTCAGCGAACTGACCAATCTTGATCTAAATGTACCCTCCGGTCAGAACTGGCCACAAAGCCTGTGCTCCAGTTGCTCCAAGAAACTGTTGTCAGCCTTTGAATATGTTAAACAGGCTTTAAATGCCCATGATTTGCTGATGAAGCAACTAACTAAGACGGCAACCACCAGCGATTGTTTGCAAGAGACACCCATGGAAATGTGTGCCGATTTACATCTAGAGCTTAAAATGGAAACAGAAGATGCAGAAGATATCACCTGCATAGACTTGCCCGAGTTGCCGGTTAAGGAGTTTGTTGATAAATCTTCTGTAGATCCCTTAATAAAGCTGGTAACTGTTAAGCAGGAGCCGGGAACTGAAAACCCCCATAATGTTTCGGAGGAGGACCCAGATTATGAGACACCAGATTCTGAGACGGATGATGAAGATTCTGTGGAATATCAGCCTAAGGAAAAGCCTAGCCAACCCAACATCAAGGAACAAAAACGCAAATTCCAGTGCGCCGAATGTCCAAAAACCTTTAAACGTGCCGCCCACTTAAAACAGCATTTAAAAGTCCATGAGGATCCCAAGCCGCCGGCCAGTGTCAGTGAGCACAAAAAGGCCAAGGCCATAGATCTCAATCTGTGCAAGCCTCATGGCTATAAGCTTATAGAGTGCATGATCTGTCAGAATCAATTTAGTAAAATAGCTGATCTTCGTCAGCATTTGGAGCAGCATCCGGAAATTGTTTCTCCAACTGGACAGGAGCCAGAAGAGTTGGCCAAACTGTATTATCCCAATGCCAAGGATATAAGTGACGATCGATTGAAGCAACTGATACGCCAAGATTTATCCAATGGACAATATCAAAATTTCTATTCCATAACCAATCAGTCGGGTTATGAAATGGAACTGGACAGTTCGGAAACGGAATGCGAGTTGGAAATTAAGGAGGAACCTCAAGTCAAATACAAGTGTGAACTATGCCCGCAGGGATATGCCAGAAAGTATCAGCTGTATGAACATCAAAGTCAGTCACATGCCTGGCTAGAGGCTCCTCATGTGTGTGGACGATGTGATGCGAGATTTGTTAGCCTGCAGCTGTTGAGACATCACAATGAAACGCTGTGCCGAAATGTCCAGAAGCGTTTCCATTGCCTTAAGTGTCCGCTACGCTTTCGCTGGAAACGAAATCTTAGAGCTCATGTGCGAGAGCATCGAAAAAATATTCAACCCCATGAGTGTCACCATTGCAAAAGTGTTTTTCGCAATAAAAAATCTCTAACAATTCATTTGCTGGGTGTGCATGCCGAAGATTCTACAGTGCTGCCATGTCATTGGTGTAATCGCAAGTTCTTTCGTCAGGATTATTTGGTGAAACATCTGAAACGTCATGGCTTAAGAGAACAGGATATACCGCTGGCCGAAACCATAATAGCGGCCACTTCCAAACCGCATGGAGTCAAGCGTATAAGCTGTAAAATTTGTAATCTTCAATTTGAGCGCATTTATGATCTGCGTGCTCACATACAGCAGGAGCTGATGATATCAAAGTCCTCATTATCCACTTCGTTGCATCAAAACTATGACTCGCTGCAAAACTATTCCATAACCAATGAATCGGGTTTCGAGTTGCATTTAGGCGATTCCGAGACGGAGGATGAAACACAATTGGTTTACATTTGTGAGCTGTGTAGTTTGCAGTGCAGGCGCAAGTACGAAATGATTCAGCATCAAAGGACAGTGCATTGTTTTGACAAGATGCCGCATGAGTGTGACAAGTGCATCTTCAAGTGTGTGACCAAGAGCATACTGGATCATCATCGTCTGGTGCAATGTGAGAGCCAGGAGAAAAAGTTTTCGTGCAGTCACTGCAGCTACAAATTCATGTGGCCCGACAATCTGCAGCTACATCTACAACAGCAGCATGGCCACTTGGGCGAGTTGCAGCAGCCCATCAGTGAAACTTTGGTTGCTCCCTCCCTACTCTCATGTCCGCATTGCGATCGCACTTATCAACAGAAATCTAGACTCAATAATCACATACGAGATGTTCATGTGAATGGCGATCGCAAGCGCAAAGAGGCCGTTAAGCTGTTTCTTTGCTCCCTGTGCGGCTACAAGACCAACACTTCCTACCAATTGCTTACACATACGCGTCGTCATACCGGCGAGAAGCCATTCAAATGTGATCTATGCGAAGCTGCCTTTCCCCGGCACTCGGAAATGATTTCGCATCGTCGCATGCATACGGGCGAGAAGCCCTTCCATTGTACGGTCTGTGGCAAGGATTTTGCACGCGCAGAGAAGCTAAAGAGGCACATGTTGACGCACAGCGGTTTGAAACCGCATGCCTGTACGTATTGTGAGAAGAGTTATCGACAGGCCAAGGATTTGAAGTTGCATTTGCAGCAGCATACGGGAGAGTGTCCCTTTATATGTGGCACTTGTGGCGAACGTTTCATACAGAGCAGCACACTGGAGAAGCATCGCATGATGCGACGACATTTTGATGAAGTGGAAGTGGCACAAAATTAG
Protein Sequence
MKLPVVCRTCNASARGAGKLLNLDTISKKYPDKSLAHMLSELTNLDLNVPSGQNWPQSLCSSCSKKLLSAFEYVKQALNAHDLLMKQLTKTATTSDCLQETPMEMCADLHLELKMETEDAEDITCIDLPELPVKEFVDKSSVDPLIKLVTVKQEPGTENPHNVSEEDPDYETPDSETDDEDSVEYQPKEKPSQPNIKEQKRKFQCAECPKTFKRAAHLKQHLKVHEDPKPPASVSEHKKAKAIDLNLCKPHGYKLIECMICQNQFSKIADLRQHLEQHPEIVSPTGQEPEELAKLYYPNAKDISDDRLKQLIRQDLSNGQYQNFYSITNQSGYEMELDSSETECELEIKEEPQVKYKCELCPQGYARKYQLYEHQSQSHAWLEAPHVCGRCDARFVSLQLLRHHNETLCRNVQKRFHCLKCPLRFRWKRNLRAHVREHRKNIQPHECHHCKSVFRNKKSLTIHLLGVHAEDSTVLPCHWCNRKFFRQDYLVKHLKRHGLREQDIPLAETIIAATSKPHGVKRISCKICNLQFERIYDLRAHIQQELMISKSSLSTSLHQNYDSLQNYSITNESGFELHLGDSETEDETQLVYICELCSLQCRRKYEMIQHQRTVHCFDKMPHECDKCIFKCVTKSILDHHRLVQCESQEKKFSCSHCSYKFMWPDNLQLHLQQQHGHLGELQQPISETLVAPSLLSCPHCDRTYQQKSRLNNHIRDVHVNGDRKRKEAVKLFLCSLCGYKTNTSYQLLTHTRRHTGEKPFKCDLCEAAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARAEKLKRHMLTHSGLKPHACTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQSSTLEKHRMMRRHFDEVEVAQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00915511;
90% Identity
-
80% Identity
-