Basic Information

Insect: Lordiphosa mommai
Gene Symbol: -
Assembly: GCA_018904225.1
Location: JAEIFT010000139.1:108759-111847[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4e-06 0.00014 22.2 5.8 1 23 127 149 127 149 0.99

2 15 0.00062 0.035 14.6 6.3 1 23 155 177 155 177 0.98

3 15 4.6e-06 0.00026 21.3 0.7 1 23 183 205 183 205 0.98

4 15 2e-06 0.00012 22.4 0.9 1 23 211 233 211 233 0.97

5 15 2.5e-06 0.00014 22.1 3.1 1 23 239 261 239 261 0.99

6 15 2.1e-06 0.00012 22.3 4.9 1 23 267 289 267 289 0.99

7 15 9.4e-07 5.3e-05 23.5 1.8 1 23 295 317 295 317 0.99

8 15 6.1e-06 0.00034 20.9 3.1 1 23 323 345 323 345 0.98

9 15 5.3e-06 0.0003 21.1 4.2 1 23 449 471 449 471 0.98

10 15 1.6e-05 0.00089 19.6 2.2 1 23 477 499 477 499 0.99

11 15 2e-05 0.0012 19.3 7.3 1 23 505 527 505 527 0.99

12 15 4.2e-06 0.00024 21.4 2.3 1 21 533 553 533 555 0.96

13 15 4.4e-06 0.00025 21.3 6.1 1 23 561 583 561 583 0.99

14 15 1e-06 5.7e-05 23.4 4.1 1 23 589 611 589 611 0.98

15 15 1.1e-06 6.2e-05 23.3 1.2 1 23 617 639 617 639 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4e-06	0.00014	22.2	5.8	1	23	127	149	127	149	0.99
2	15	0.00062	0.035	14.6	6.3	1	23	155	177	155	177	0.98
3	15	4.6e-06	0.00026	21.3	0.7	1	23	183	205	183	205	0.98
4	15	2e-06	0.00012	22.4	0.9	1	23	211	233	211	233	0.97
5	15	2.5e-06	0.00014	22.1	3.1	1	23	239	261	239	261	0.99
6	15	2.1e-06	0.00012	22.3	4.9	1	23	267	289	267	289	0.99
7	15	9.4e-07	5.3e-05	23.5	1.8	1	23	295	317	295	317	0.99
8	15	6.1e-06	0.00034	20.9	3.1	1	23	323	345	323	345	0.98
9	15	5.3e-06	0.0003	21.1	4.2	1	23	449	471	449	471	0.98
10	15	1.6e-05	0.00089	19.6	2.2	1	23	477	499	477	499	0.99
11	15	2e-05	0.0012	19.3	7.3	1	23	505	527	505	527	0.99
12	15	4.2e-06	0.00024	21.4	2.3	1	21	533	553	533	555	0.96
13	15	4.4e-06	0.00025	21.3	6.1	1	23	561	583	561	583	0.99
14	15	1e-06	5.7e-05	23.4	4.1	1	23	589	611	589	611	0.98
15	15	1.1e-06	6.2e-05	23.3	1.2	1	23	617	639	617	639	0.98

Sequence Information

Coding Sequence: ATGGCAAGCAAAGAAAAGGAACAAGATGTGACGGAACTATGCTGTGTGTGTATGAAAGCGGGTTCCACTTCATGGCCGAATATATTCACCGACATGGACGTCAAGGCAGGAGAAGACACTTTGCTGTCTATAATGGAGGAGACCACGGGTAGCGTAATTAAACCGGATGAGGGACTACCCCAAAGGATATGCCCTTCATGCCTGCAAGCAGCCAAAATGACCTTGAAATTTAAACAGCGATTTGAGAAGAGTTTTCAGTGCTTAAGCAAGCAAATGGAACATATTAAAGCCACATCAACCTCTGTGAAATCATTGACCGACGAGGAGATATTCGAAAGCGAATGGAAAGAGCTGGAAGCTAACAATGACAATTCAGAATTCAAATGCCTACACTGCTCAAAAACCTTTACCTATAAAGGCAGTTTAAAGAATCACCTTCGCACTCATATTGGAAACCCTCAATTCAAATGTTCACATTGCTCGAAGCCCTGCAAATCAAAATATGATCTAGACAGACACGAACGCCTTCACACGGAAGCAAACCTTTACGCATGTTCAGTATGCTCAATGACTTTCAATCAAAATAGCCGTTTGCAGGCTCACCTACGCACTCACTCAGACGAACGACCCTTCAAATGTACGGAGTGCCCGAAAGCATTTCGCGATAATGGCTCTCTTAGTAGACACTTTCTTTCTCACACCGGGGAACGACCCTACGAATGTACCCAGTGCTTGAAGACCTTCAATAAGTCAAGCACTTTAAAGAATCACCTACGCACTCATACTGGAGAGCGACCCTACGAATGTTCACAGTGCTCAAAGACCTTTTCCCAGCATAGCAGTCTAACATATCACCTACGCACTCATACCAATGAACGACCCTTCAAATGTCCCCACTGTCCGGATTCCTTTATCCAAAAAGCCAATCTTAAAAGTCACCTACGCACGCATTCGGATGAAGAACCCTTTGAATGTGACCAGTGTTCGAAGACTTTTAAATCACAACGCAGTCTAAAGGAACACACACGCAATCATACCGGAGAACGACCCTTTAAGTGTACGCACTGCTCGAATTCGGAAACTGTTCCCACTGTCACCACCTGGTTTAACATATTCACCGACACAGTCTCCGAGGCAGAACAAGGCAGCTTGGTGTCCTTACTAGAGGAGGTGACTGGCAGCATGATTAAACCAAACGATGGACTTTCCCAAATGATATGCGAAACTTGCCTGCAATCCGCAAAAATTGCATTTAAATTCAAGCGGCGACTTGAGAAAAGTCTACAGTGCTTCAGCGAGCAAATGGAACAGAACTTCGAATGGAACAGAAAGGACAAACCATTATTTGAATGTTCACATTGCACAAAGGTGTTCAGCTACAGGTCCGAGCTAAAGATTCATTTTCGCAGTCATACAGGTCTACGACCATTCAAGTGTTCACACTGCCCAAAGACCTTTGGCCGAAAGGGAATTCTAATCAATCACCTTCGCACTCATTCAGCAGAACGTCTCTTCGAGTGTTCCCACTGCTCGATGACCTTTAATCGAAATAGCTGTTTAAAGAATCATCTTCGCACTCATACGGGCGAACGACCCTACCAGTGTACCGACTGCTCGAAAGCCTTTAGTCAGAAGGGCAATCTAATTGATCATCTACGCTGTCATACGGGGGAACAACCGTTTAAGTGTTTACAGTGCTCAAAGACCTTTAGCCATAAAAGCAGTCTTAATTATCATTTGCGTACACACACTAGCAAACGACCCTTTACATGTACCCACTGCTCGAAAACCTTTAGCCAAAATAGCAGTCTGCAGAATCATCTGGGCACTCATTCGGGGGAACGACCCTTTGAATGTTTACAGTGTTCGATAACTTTTAAACGAAACTACGATCTAACGAGACACATACGCATACACACTGCGGAACGAGCCTTAAGTGTTGCCAACGATCAGCCATGA
Protein Sequence: MASKEKEQDVTELCCVCMKAGSTSWPNIFTDMDVKAGEDTLLSIMEETTGSVIKPDEGLPQRICPSCLQAAKMTLKFKQRFEKSFQCLSKQMEHIKATSTSVKSLTDEEIFESEWKELEANNDNSEFKCLHCSKTFTYKGSLKNHLRTHIGNPQFKCSHCSKPCKSKYDLDRHERLHTEANLYACSVCSMTFNQNSRLQAHLRTHSDERPFKCTECPKAFRDNGSLSRHFLSHTGERPYECTQCLKTFNKSSTLKNHLRTHTGERPYECSQCSKTFSQHSSLTYHLRTHTNERPFKCPHCPDSFIQKANLKSHLRTHSDEEPFECDQCSKTFKSQRSLKEHTRNHTGERPFKCTHCSNSETVPTVTTWFNIFTDTVSEAEQGSLVSLLEEVTGSMIKPNDGLSQMICETCLQSAKIAFKFKRRLEKSLQCFSEQMEQNFEWNRKDKPLFECSHCTKVFSYRSELKIHFRSHTGLRPFKCSHCPKTFGRKGILINHLRTHSAERLFECSHCSMTFNRNSCLKNHLRTHTGERPYQCTDCSKAFSQKGNLIDHLRCHTGEQPFKCLQCSKTFSHKSSLNYHLRTHTSKRPFTCTHCSKTFSQNSSLQNHLGTHSGERPFECLQCSITFKRNYDLTRHIRIHTAERALSVANDQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -