Lmom016411.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
-
Assembly
GCA_018904225.1
Location
JAEIFT010000044.1:45326-47047[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.1e-07 6.4e-06 26.4 3.5 1 23 115 137 115 137 0.99
2 16 6.3e-08 3.6e-06 27.2 1.5 1 23 143 165 143 165 0.99
3 16 5.6e-06 0.00032 21.0 4.2 3 23 173 193 171 193 0.98
4 16 8e-06 0.00046 20.5 4.9 1 23 199 221 199 221 0.98
5 16 6.9e-06 0.00039 20.7 1.7 3 23 243 263 241 263 0.98
6 16 8.4e-05 0.0048 17.3 5.3 1 22 269 290 269 290 0.95
7 16 1.8e-08 1e-06 28.9 3.1 1 23 297 319 297 319 0.99
8 16 3.9e-06 0.00022 21.5 0.5 1 23 325 347 325 347 0.99
9 16 1.3e-05 0.00075 19.9 1.8 1 23 353 375 353 375 0.99
10 16 2.7e-05 0.0015 18.9 0.5 3 23 383 403 381 403 0.98
11 16 8.2e-06 0.00047 20.5 2.4 1 23 409 431 409 431 0.98
12 16 0.0015 0.083 13.4 1.0 1 23 437 459 437 459 0.99
13 16 1.1e-07 6.3e-06 26.4 1.5 1 23 465 487 465 487 0.99
14 16 1.1e-06 6.2e-05 23.3 5.1 1 23 493 515 493 515 0.99
15 16 4.4e-06 0.00025 21.4 3.8 1 23 521 543 521 543 0.99
16 16 0.00046 0.026 15.0 4.9 1 23 549 571 549 571 0.99

Sequence Information

Coding Sequence
ATGTCCAACGGAGCTAAGGGACTTAATTTGACCGAACTATGCTGCGTTTGTATGTCCAGTTCAGGATCTGGTACCGACACCAACGGCTGGCTGAATATATACACAGACTCGGATGCGGGACACTGCGTGAAGTTTTTAATAGAGGAGGTAACTGGCCGAGTGGTTAAACCAACTGAGGATCTACCTGGACAGATATGCCCCTCATGCTTGGCAGCAGCAAAAATTGCCTTTAATTTCAAGCGCCGCTTTGAGAATAGTCTTCAATGCTTCAACTACAATGGGCTTGAATTTGTCACGGAAGATGGGCGTTGCAATGGTGAGAGCGATAGCGTTGGTTCGCCGTTCCAATGTTCACACTGCCCGAAGACCTTTACCCTAAAAGGCAATCTACAGAATCACCTACGCACACATACTGGCGAGCGACCCTTCCAATGTTTATATTGTACCAAGGCATTTACCCAAAAGGGCAATCTAGAAAATCACCTACGCACTCATACTGGCGAACGACCCTTCGGTTGTTCACACTGCTCGAAGACTTTTACCCAACAAACCCAGCTAGATAGACACCTTCGCACTCATACGGGCGAACAACACTTTAAGTGTTCTGAGTGCTCGAGGAGCTTTTACCAAAAATGTGCTCTAAAGAGACACATTCGTCTTCATACTAGAGAACGAAAATTTATATCTTCATATAAAGAAGGGACTAGCGAAGAGCAAACCTTCGGATGTTCACACTGCACGGAGGCTTTTAGCCAAAAAGTCCAGCTGGAAAATCACCTGCGCACTCATACGTTAGAGCGACCCTTCGAATGTTCACACTGTTCGAAGACGTTTACCCATAAAGTCCAACTAGAGAGTCACCTTTGCACTTATCCGGGCGAGCGACCCTTTCAATGTACTTACTGCACGAAGGCTTTTACGCAAAAAACCAATCTACAGAATCACATACGCACCCATACTGGCGACCGACCCTTTAAATGTTCTTACTGCTCGGAGGCGTTTAATGTAAAGACCAATCTAATAATTCACCTTCGCATCCATACTGGCGAGCGACCCTTTGAATGTTCACACTGCATGAAGGTTTTTGCCCAAAAAGGCAACCTGGATAGTCATCTACGCACTCATACTGGCGAACGACCCTTTGGATGTCCACACTGCGAGGAGGCTTTTACCCAAAAAGTTCAGCTAGATAGTCACCTACGCATACATTCTGGCGAAGAACCCTTTAAGTGTTCACTGTGTTCGAAGATCTTTAGTCGAAAATTTGGCCTAGAGCGACACTTTCGTATTCATACAGGCGAACGACCCTTCAAATGTTCCCACTGTTCGGAGGCATTTATCGATGGGCCTATTCTTAAGAAACACCTACGCACTCATACGGGCGAACAACCCTTTAAGTGTTCAGAGTGTTCGAAAAGCTTTAGCCAACAATTTGATCTAGAGCGACACGTTCGAATTCATACCTATGAACGACCCTTCAAGTGTTCCCACTGTTCGCAGGCTTTTAGAACGAAAAACAATCTACAGAGTCACCTACGCACCCATACTGGCGAGCGACCCTTCAGATGTTCACACTGCACGGAGGCTTTTAGTCAAAGAACCCAACTAGATAGACACCTACGCACTCATACTGGCGAACAACCCTATAAGTGTGTACACTGCTCGAAGTGCTTAAGCGGAAAATATGCTCTGGAGAGGCACTATCTAACTCATACAGCTTGA
Protein Sequence
MSNGAKGLNLTELCCVCMSSSGSGTDTNGWLNIYTDSDAGHCVKFLIEEVTGRVVKPTEDLPGQICPSCLAAAKIAFNFKRRFENSLQCFNYNGLEFVTEDGRCNGESDSVGSPFQCSHCPKTFTLKGNLQNHLRTHTGERPFQCLYCTKAFTQKGNLENHLRTHTGERPFGCSHCSKTFTQQTQLDRHLRTHTGEQHFKCSECSRSFYQKCALKRHIRLHTRERKFISSYKEGTSEEQTFGCSHCTEAFSQKVQLENHLRTHTLERPFECSHCSKTFTHKVQLESHLCTYPGERPFQCTYCTKAFTQKTNLQNHIRTHTGDRPFKCSYCSEAFNVKTNLIIHLRIHTGERPFECSHCMKVFAQKGNLDSHLRTHTGERPFGCPHCEEAFTQKVQLDSHLRIHSGEEPFKCSLCSKIFSRKFGLERHFRIHTGERPFKCSHCSEAFIDGPILKKHLRTHTGEQPFKCSECSKSFSQQFDLERHVRIHTYERPFKCSHCSQAFRTKNNLQSHLRTHTGERPFRCSHCTEAFSQRTQLDRHLRTHTGEQPYKCVHCSKCLSGKYALERHYLTHTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-