Lmom012874.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
-
Assembly
GCA_018904225.1
Location
JAEIFT010000432.1:133117-136386[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.018 1 10.0 5.1 2 23 153 174 152 174 0.96
2 32 3e-06 0.00017 21.9 2.4 1 23 180 202 180 202 0.99
3 32 3.7e-06 0.00021 21.6 0.5 3 23 210 230 208 230 0.98
4 32 0.0012 0.069 13.7 5.9 1 23 236 258 236 258 0.98
5 32 2.5e-05 0.0014 19.0 2.8 1 23 264 286 264 286 0.99
6 32 4.9e-06 0.00028 21.2 2.7 1 23 292 314 292 314 0.99
7 32 2.4e-05 0.0014 19.0 1.5 3 23 322 342 320 342 0.97
8 32 0.00039 0.022 15.2 5.1 1 23 348 370 348 370 0.99
9 32 1.4e-05 0.00082 19.7 6.7 1 23 376 398 376 398 0.97
10 32 7.2e-05 0.0041 17.5 1.7 1 21 404 424 404 425 0.96
11 32 6e-05 0.0034 17.8 5.5 1 23 432 454 432 454 0.98
12 32 2.9e-06 0.00017 21.9 6.1 1 23 460 482 460 482 0.99
13 32 5.2e-06 0.00029 21.1 5.4 1 23 488 510 488 510 0.98
14 32 0.00017 0.0097 16.4 1.2 1 21 516 536 516 537 0.96
15 32 0.00016 0.0092 16.4 5.5 1 23 544 566 544 566 0.98
16 32 4.5e-06 0.00026 21.3 3.6 1 23 572 594 572 594 0.99
17 32 2.6e-06 0.00015 22.1 2.2 1 23 600 622 600 622 0.99
18 32 0.0015 0.086 13.4 1.5 3 23 630 650 628 650 0.98
19 32 0.00071 0.04 14.4 0.6 2 23 657 678 656 678 0.97
20 32 6.6e-09 3.7e-07 30.3 2.6 1 23 704 726 704 726 0.99
21 32 9.7e-06 0.00055 20.3 0.8 3 23 734 754 732 754 0.98
22 32 0.039 2.2 8.9 5.2 1 23 760 782 760 782 0.98
23 32 0.00028 0.016 15.7 1.7 1 23 788 810 788 810 0.99
24 32 2e-05 0.0011 19.3 1.4 1 23 816 838 816 838 0.99
25 32 0.0047 0.27 11.8 1.2 3 23 846 866 844 866 0.98
26 32 7.4e-09 4.2e-07 30.1 2.8 1 23 894 916 894 916 0.99
27 32 8.6e-05 0.0049 17.3 1.3 3 23 924 944 922 944 0.97
28 32 0.00053 0.03 14.8 5.6 1 23 950 972 950 972 0.99
29 32 7e-07 4e-05 23.9 1.6 2 23 979 1000 978 1000 0.97
30 32 5.1e-05 0.0029 18.0 3.8 1 23 1006 1028 1006 1028 0.99
31 32 1.6e-05 0.00089 19.6 1.6 1 23 1034 1056 1034 1056 0.98
32 32 1.4e-06 8e-05 22.9 3.0 1 23 1062 1084 1062 1084 0.99

Sequence Information

Coding Sequence
ATGTCCTGCAAAGCAAAGGGACCAAATGTGGCCGAACAATGTCGCGTGTGCTTGTCAAATTTGGCAGAAGCAACCAATACCAACTGGCGAAATATATTCACCGACTCGGAAGCGGAACAAGGCGACTTAATGTTTATATTAGAGGAGGTGACTGGACGCGCGATTAAGCCTGAAGAGGATCTACCCGAAATGATATGCCCCTCCTGCTTGGCAACGGCAAAAACGGCATTAAACTTCAAACGGCGTTTTGAGAAGAGTCTTCAGCTGATGCAGCAGAGCGAAAACATTTCTTGCTTGGAAGCACTAAGCAACGAGAACAGGCAAAGGGAGACCTTAAAAAAAGAAAGCGTAAGCGAAGAGAGCGAACACGAAGAGTTTGAATCTCTCACCGAAGAGCGAAAACCTTGTGTAAGCCAAGTGCTGTGGTCACGCACTCATACCAGAAAAGGACCCCTAAAATGTTGTTACTGCCCAAAGACCTTTAGATTGAAAAGCGCATTGAAATGTCACCTTCTCATTCATACTGGCAATCGACCCTTTAAGTGTTCCCAATGTTCGAATAGCTTTGGCAAAAAAAGCAATCTGGAGAGACACATACGCACTCATACTGGTGAACGACCCTTTGGATGCTCCTACTGCCCGAAGGCTTTTACCAGTCAACGCAGTCTTAACGAACACCTACGTATTCACACTGACGAACGGCCCTTCGAATGTTCCCACTGCTCGCAGACTTTTAGTTGTCAAAGCGATCTAAAAGATCACCTACGCTCTCATACTGGCGAACGACCCTTCAAGTGTTCTCTATGCCCGAAGTCTTATGTGCATGAAAGCAGGCTAAAGGATCACCTACGCACTCATACGGGCGAACAACCCTTTAAGTGTTCCCATTGCTCAATTAGCTTTGGCACTAGAAGCAATCTGGGGAGACACATACGCTCTCATACGGGTGAACGACCCTTCGGATGTCCTTACTGCTCAAAGGCTTTTACCAGGCAACGCAGTCTAAACGAACACCTACACATTCATACTGGCGAACGACCCTTTAAGTGTACCCAATGCTCGAAGTCTTACCTACATCAAAGCAGTCTAAAGGATCACCTACGCACTCATACTAACGAACGGCCCTTCAAGTGTTCCCACTGCTCAAAATGCTTTAGCAAAAGTAACAATCTGAAGAGGCACATTGGCATTCATTCTGTTAAACAAACTTTCAAGTGTTCCCACTGCTCGAAAAGTTTTATATATGAAAGAAGTCTAAATGCACATCTTCGCAACTATAATAGCGAGCGATCCTTTGAGTGCAGCCACTGCTCGAAGAGTTTTATTAATGAGAGCTGTCTAAAGTATCACCTACGTATTCATACGGGCGAACGATCCTTTAAGTGTTCCCACTGTCCAAAGACTTTTATTACTCAAAGCTGTCTAAAAATTCACCTACGCTCCCATACCGGCGAACGACCTTACAAGTGTTCCCAATGCTCAAAATGCTTTAGCAAAAGTAACAATCTGAAAAGGCACATCGGCACTCATTCTGTTAAAGAAACTTTCGAGTGTTCCCACTGCTCGAAGAGTTTTATATATGAAAGGAGTCTAAATATACATCTTCGCAACGATAATAGCAAGCGATCCTTTGAATGCAGCCACTGCTCGCGGACTTTTATTAATGAGAGCTGTCTAAAGTATCACCTACGCATTCATACTGGTAAACGACCCTTCGAATGTTCCCACTGCCCGAAGAATTTTAATAATCGAAGCCTTTTCAATGATCACCTACGCACTCATACTGGCGAGAAACCTTTCAAGTGTTCGCAATGCTTAAAAAGCTTTGGTACAAAAAGCAATATGGAGAGACACATACGCTCTCATGCTGCAGAACGATCCTTTGGCTGTTCCCACTGCTCGAAAATTTATGCCAGTCAACGCAGTCTAAGCGAACACCTACTCACTCATACTGACGAACGACCTTTAGAATGTTCCCACTGCTCGGAAGCTTTTGCCAGTCAACGCTATCTTGACGAACACCTACTCACTCATACGGGCAATCAATTCTTAGAATCGGAGACTTTTATTAATGAAAGCATTGTTGATACTCATACTATCGAACGAGCCTTCAAGTGTTCCCAATGCCCAAAAAGCTTTTCCAAAAAAAGCAATCTGGAGAGACACATACGCACTCATACTGGTGAACGACCCTTCGGATGCTCCTACTGCTCGAAGGCTTTTACCAGTCAACGAAGTCTTAACGAACACCTACGCATTCACACTGACGAACGGCCCTTCGAATGTTCCCACTGCTCGCTGACTTTTAGTTGTCAAACCGATCTAAAAGATCACCTAAGCTCTCATACTGGCGAACGACCCTTCAAGTGTTCCCTATGCACAAAATCTTATGTGCTCGAAAGCAGGCTAAAGGATCACCTACGCACTCATACTGGCGAAAAACCTTTCAAGTGTTCCCAATGCTCAAAAAGCTTTGGCATAAAAAGCGATATGGAGAGACACATACGCTCTCATGCTGGAGAACGATCCTTTGGTTGTTCCCACTGCTCGAAAATTTATGCCAGTCAACGCTATCTTGACGAACACCTACTCACTCATACGGGCAAACAATTCTTAGAATCGAAGACTAATCAATGCTTTTTCGATGATCACGTACGCACTCATACTAGCGAACGAGACTTCAAGTGTTCCCAATGCCCAAAAAGCTTTACCAAAAAAAGTAATCTGGAGAGACACATACGCACTCATACTGGTGAACGACCCTTCGGATGCTCCTACTGCTCGAAGACTTTTACCAGTCAACGCACTCTCAACGAACACCTATACATTCATACTGGCGAACGACCCTTTAAGTGTTCCCACTGCTCGATGACTTTTATCAATCAACGCTATTTTTACGAACACCTACGCACTCATACAGGCAAAGAATTCTTAGAATGCACCCACTGCTCGAAGACTTTTATTCGTCAAGGCGATCTAAATGATCACATACGCACTCATACTGGCGAAAAACCCTTCCAGTGTTCCCAATGCTCCAAAGGCTTTGCCAAAAAATGTAATCTGGATAGGCATATACGCTCTCATACTGGTGAACGACCCTTCGAATGTTCCCACTGCTCGAAGGCTTTTGCCAGTCAACGCAGTCTTAATGAACACCTACTCAGTCATACTGGAGAACGACCCTTTGAATGTAACAAATGTACAAAAACCTTTATCCGTCTAAGTAGTCTAAAGTATCACCTTCGCACTCATAATAAAGAACAAATTTAA
Protein Sequence
MSCKAKGPNVAEQCRVCLSNLAEATNTNWRNIFTDSEAEQGDLMFILEEVTGRAIKPEEDLPEMICPSCLATAKTALNFKRRFEKSLQLMQQSENISCLEALSNENRQRETLKKESVSEESEHEEFESLTEERKPCVSQVLWSRTHTRKGPLKCCYCPKTFRLKSALKCHLLIHTGNRPFKCSQCSNSFGKKSNLERHIRTHTGERPFGCSYCPKAFTSQRSLNEHLRIHTDERPFECSHCSQTFSCQSDLKDHLRSHTGERPFKCSLCPKSYVHESRLKDHLRTHTGEQPFKCSHCSISFGTRSNLGRHIRSHTGERPFGCPYCSKAFTRQRSLNEHLHIHTGERPFKCTQCSKSYLHQSSLKDHLRTHTNERPFKCSHCSKCFSKSNNLKRHIGIHSVKQTFKCSHCSKSFIYERSLNAHLRNYNSERSFECSHCSKSFINESCLKYHLRIHTGERSFKCSHCPKTFITQSCLKIHLRSHTGERPYKCSQCSKCFSKSNNLKRHIGTHSVKETFECSHCSKSFIYERSLNIHLRNDNSKRSFECSHCSRTFINESCLKYHLRIHTGKRPFECSHCPKNFNNRSLFNDHLRTHTGEKPFKCSQCLKSFGTKSNMERHIRSHAAERSFGCSHCSKIYASQRSLSEHLLTHTDERPLECSHCSEAFASQRYLDEHLLTHTGNQFLESETFINESIVDTHTIERAFKCSQCPKSFSKKSNLERHIRTHTGERPFGCSYCSKAFTSQRSLNEHLRIHTDERPFECSHCSLTFSCQTDLKDHLSSHTGERPFKCSLCTKSYVLESRLKDHLRTHTGEKPFKCSQCSKSFGIKSDMERHIRSHAGERSFGCSHCSKIYASQRYLDEHLLTHTGKQFLESKTNQCFFDDHVRTHTSERDFKCSQCPKSFTKKSNLERHIRTHTGERPFGCSYCSKTFTSQRTLNEHLYIHTGERPFKCSHCSMTFINQRYFYEHLRTHTGKEFLECTHCSKTFIRQGDLNDHIRTHTGEKPFQCSQCSKGFAKKCNLDRHIRSHTGERPFECSHCSKAFASQRSLNEHLLSHTGERPFECNKCTKTFIRLSSLKYHLRTHNKEQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-