Lmom012885.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000432.1:178067-179290[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4 1.4e+03 -0.5 0.1 17 22 12 17 5 30 0.74 2 10 0.032 33 4.6 0.3 17 30 154 167 145 176 0.77 3 10 0.0046 4.7 7.3 4.8 17 40 182 202 171 205 0.78 4 10 0.21 2.2e+02 2.0 7.6 6 41 199 231 197 233 0.78 5 10 0.013 14 5.9 0.2 18 41 239 259 232 260 0.89 6 10 5.1 5.2e+03 -2.4 0.2 18 27 267 276 266 289 0.66 7 10 3.6e-05 0.037 14.1 4.3 17 41 294 315 280 316 0.88 8 10 0.0011 1.2 9.3 1.6 18 41 323 343 319 345 0.91 9 10 0.0017 1.7 8.7 1.1 18 40 351 370 347 372 0.93 10 10 0.021 21 5.3 0.3 18 41 379 399 373 401 0.91
Sequence Information
- Coding Sequence
- ATGGCCTGCATATCAAAGAGGCCAAAGGTGATGGAGCAATGCCGCATTTGCATTTCCAGTTCGGCAGATGGGACCATCAGCAACTGGCGAAATATATTCACCGACTCGGAAGCGGAACAAGGCGGATTAATGTTTATAATAGAAGAGGTTACTGGAGGCGTAATTAAACCAGATGAGAATCTACCCGATAGGATATGCTCCTCCTGCTTGGCAGCAGCAAAAATAGCCTTAAATTTCAAGCGGCGATTCGAGCAGAGTCTTCAGCTGATGGAGCAGAATGAGAACACAATCTGGTTGAATGCACCGACCAAAGAGTATTGGACGCACGTCAAGTCAGAGGAGATCTTCAAAAGCGAAGAGAGCGAAAAAGAAGAGTTCGAATCTCTCATTGGTAGCAGCTGCGAAGAGAGCAAAAGTATTGAGCTCGAATTGGACCAAGTTCAGGCTGACAAACTACCCTTCGAATGTTCCCACTGTTCGAGGACTTTCGCCTATCAAAACACTTTTGATGATCACCTACTCTCTCATTCTGACGAACGACCCTTTGCATGTGCCCACTGCTCAAAGACCTATAAAAGAAAGAATTCACTAAACCATCACTTACGCATTCATACTGGCGAGCAACCCTTTCAATGTACCCACTGTTCGAAGGCTTATTCTCATCTCCACAAATTAAAAATTCACCTACGCACTCATACTGGCGAACGACCCTTCGAATGTGACCAGTGCTCGAAAACCTTTAACGATAATGACGGTCTAAAGCGACATCTACGCACTCATACTGGCGAGCGACCCTTCGAATGTTCGCAGTGTTCGAAAACATTTTTCCAAAGAGGTCATCTTCAGGGACACCTTCGCACTCATTCGGCCGAGCGACCCTTCGAATGTTCCTACTGCACGAAAGCATTTAACAATGTTAGCTGTCTAAAGAGGCACCTACGCACTCATACTGGTGAACGACCCTTGGAATGTTCCCACTGCTCGAAGACTTTTTCTCATCAAAATACTTTAAAGGATCACTTACGCACGCATACAGGAGAAAGACCCTTTGAATGTTCCCACTGTTTGAAAACCTTTAACCGAGTAAGCAGTCTAAAGGATCATTTACGTATTCATACTGGCGAGCGACCCTTTGAATGTGCCCAATGCTTAAGGACTTTTGCCTATAAAAGCAATCTAAGGGACCACATACGCACTCATAAAGGCGGTTCCACGTCTATTTAA
- Protein Sequence
- MACISKRPKVMEQCRICISSSADGTISNWRNIFTDSEAEQGGLMFIIEEVTGGVIKPDENLPDRICSSCLAAAKIALNFKRRFEQSLQLMEQNENTIWLNAPTKEYWTHVKSEEIFKSEESEKEEFESLIGSSCEESKSIELELDQVQADKLPFECSHCSRTFAYQNTFDDHLLSHSDERPFACAHCSKTYKRKNSLNHHLRIHTGEQPFQCTHCSKAYSHLHKLKIHLRTHTGERPFECDQCSKTFNDNDGLKRHLRTHTGERPFECSQCSKTFFQRGHLQGHLRTHSAERPFECSYCTKAFNNVSCLKRHLRTHTGERPLECSHCSKTFSHQNTLKDHLRTHTGERPFECSHCLKTFNRVSSLKDHLRIHTGERPFECAQCLRTFAYKSNLRDHIRTHKGGSTSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919257;
- 90% Identity
- iTF_00919257;
- 80% Identity
- iTF_00919257;