Lmom012879.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000432.1:151697-152902[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0073 7.5 6.7 1.0 18 35 123 137 113 148 0.78 2 10 0.29 3e+02 1.6 2.7 18 28 151 161 140 175 0.79 3 10 2.3 2.4e+03 -1.3 0.9 18 39 179 197 166 201 0.74 4 10 0.00048 0.49 10.5 2.0 4 41 194 227 191 230 0.81 5 10 0.0043 4.4 7.4 0.4 18 41 235 255 228 257 0.90 6 10 2.1e-05 0.021 14.8 4.7 5 41 251 283 248 284 0.85 7 10 0.058 59 3.8 0.1 18 28 291 301 287 312 0.83 8 10 4.2 4.3e+03 -2.1 0.4 19 39 320 337 318 341 0.60 9 10 7.1e-06 0.0072 16.4 2.0 4 40 334 366 331 369 0.84 10 10 0.37 3.7e+02 1.3 1.3 19 41 376 395 374 397 0.85
Sequence Information
- Coding Sequence
- ATGGAATCCAACAACAACTGGCCAAACATATTCACAGACCCCGCAGAGGAAGAAGGCGGCTTAATGTTTATAATAGCGGAGGTGACTGGACAAGAGGTACAACCTGAAGAGGATCTACCTGAAAGAATATGCATTTTATGCTTGGCCGAGGCAAAAACGGCATTTAGTTTTAAGCGACGATTTGAGAAGAGTTTTCAGCTAATGAAGCCCACAAACGTGAATGGCACACAGGACAAGCGGGATGAGACCATTAAAAGCGAAAATGAAGAATTCGAATCTGCTACTGGATACAGCAGCGAAGAGAGTGAACGGAATGAGCTTGAAACTTACATCCCAGAAATGGAAGTGCAGGACAAACGACCCTTTGAATGTCCCCACTGCTCGAAGACGTATGCCCAAAAACACAGTCTAACGATTCACCTACGTATTCATACTGGCGAGCGACCTTACGAATGTTCCCACTGCACGAAGACTTTTACCCATCTAGCCAGTCTAAAGGATCACTTACTCACACATACTGGCGAACGACCCTTTGAATGCTCACAGTGCTCGAAATCGTTTAGAAAAAAAGACTCTCTGAAGAAGCACCTCAGTACTCATACAGGAGAAAAACCCTTCGAATGCTCCCACTGCTCGAAAGCATTTACCCGTAAAGGCAATCTAGAGTATCACCTACAAACTCATACGAGCGAGCGACCCTTTGCATGTCCTCACTGTCCGAAGACGTATGCCCAACAACATCGTCTTAAAGATCACCTACGCACTCATACAACTGAACGACTCTTCGAATGTACCCACTGCTCGAAAACCTTTACCCGTAAAAGTAATCTAATGGATCACATACGCACTCATACGGGCGAGCGACCCTTCGAATGTTCCCACTGTTCGAAGACTTTTACCCATCCATCCAGTCTATCAGATCACCAACGCTCTCATACTGGCGAACGACCATTTGAATGTTCCCAGTGCTCGAAATCTTTTAGAAAAAATGACTCTCTAAAGAAGCACCTTAGCACTCATACAGGAGAAAAACCCTTCGAATGCTCCCACTGCTCGAAAACCTTTACCCGTAAAAGCAATTTAATGGATCACCTACAAATTCATACGGGCGAGCGACCCTTTCCATGTTCTCTCTGCTCGAGGACCTTTGCACATAAAAACAGTCTAAGGTATCACCTTACCACACATAATAAGGATGATGGATAA
- Protein Sequence
- MESNNNWPNIFTDPAEEEGGLMFIIAEVTGQEVQPEEDLPERICILCLAEAKTAFSFKRRFEKSFQLMKPTNVNGTQDKRDETIKSENEEFESATGYSSEESERNELETYIPEMEVQDKRPFECPHCSKTYAQKHSLTIHLRIHTGERPYECSHCTKTFTHLASLKDHLLTHTGERPFECSQCSKSFRKKDSLKKHLSTHTGEKPFECSHCSKAFTRKGNLEYHLQTHTSERPFACPHCPKTYAQQHRLKDHLRTHTTERLFECTHCSKTFTRKSNLMDHIRTHTGERPFECSHCSKTFTHPSSLSDHQRSHTGERPFECSQCSKSFRKNDSLKKHLSTHTGEKPFECSHCSKTFTRKSNLMDHLQIHTGERPFPCSLCSRTFAHKNSLRYHLTTHNKDDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919227;
- 90% Identity
- iTF_00919227;
- 80% Identity
- iTF_00919227;