Lmom001570.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000139.1:65625-70235[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.1e-05 0.062 13.4 3.4 4 41 134 167 131 169 0.84 2 8 0.38 3.9e+02 1.2 0.8 18 40 175 194 171 196 0.76 3 8 0.00056 0.57 10.3 1.5 5 39 190 221 186 229 0.74 4 8 0.00052 0.53 10.4 0.7 18 41 231 251 227 253 0.88 5 8 0.046 47 4.1 3.6 13 38 254 280 247 281 0.80 6 8 0.014 14 5.8 0.3 17 40 286 306 277 313 0.85 7 8 0.024 24 5.1 2.5 17 41 314 335 308 336 0.85 8 8 0.04 41 4.3 0.1 22 41 347 363 341 364 0.76
Sequence Information
- Coding Sequence
- ATGGCCCTTGGAGGAAAGGAACAAAATGTGTACGAGCTATGCTACATATGCATGGCCAGTTCGAAAGACTGTACCACTGACACCGCCTCATGGCTGAATATATTCACCGACACAGACGCGGAGTCAGGTCTAGGCAGCTTGAGTGTCCATCATAGAGGAGCAAAATTGGCCTTAAAGTTCAAGCGGCGATTTGAGAAGAGTTTTCAGTGCTTAACCTTCGACGAGAAGAACTTTAAATGCGAAATCTTAAGCGAACAACAGGACAGAGAAGAGTTCGAATCACTTACGGAAGACGAGAGCTACAAAGGCGAAAGCTCCAGCGAATCTCTTACTCATACTAAGGAGCGACCCTTTAAGTGTGACCAATGCTCGATGGCTTTTACCACAAAGAACATTTTAAAGAATCACTTTATCACTCATAGCGACGCTCGACCCTACAAGTGTGAGCACTGCTCGAAAACCTTTAGCCGTAAGCGTACTATGGTCAATCACCTTAACACTCATACCGGAGAACGACCCTTCAAGTGTGACTATTGCCCAAAGAGTTATATCCTCAAAGACGTCCTAAAGTATCATCTGCGCACACATACTGGAGAACGACCCTTCGAGTGTGACTATTGCTCAAAAACCTTTAGCAGAAGGAACACTTTAAATGATCATCTTGACACTCATACGGGTATACGCACCTTCAAGTGTTCATACTGCCCGAAGACTTTTGCCCGAAATTCAACTCTCAACAATCACCTGCGCACTCATACCGTGGAGAACCAACTCAAGTGTTTTCAGTGCTCAAAGACCTTCAGCAATAAAAAGAGTCTAACGGATCACCTGCTTTCACATACCGGAGAGCAACCCTACCAATGTTTCAACTGCCCAAAGACGTTTTCCTATAAAAGCAGCCTGAGGAATCATCTAAACGTTCATTCTGGAGAACGTACACTCAAATGCTCCTACTGCTCGATGACTTTTAGCCAAAATACCACTTTAAATAATCACCTTCGCACTCATACGGGCGAACGACCCTATCAGTGTCCAGATTGCCCCAAGTCTTTTACCCAAACCAGCTCTCTAAAAAATCATCTACGCACTCACACTGGCGAGTGTCCCTTCAAGTCTGAATTGGCTGGTGTGTCTGATATACCGAGTCCGCCGCCAGTGAAGGCCAGCAAAAAGGGTGCGGCAGGCAAGGCCAAATCACAGGCGGCCATTGCTGAGCTATGA
- Protein Sequence
- MALGGKEQNVYELCYICMASSKDCTTDTASWLNIFTDTDAESGLGSLSVHHRGAKLALKFKRRFEKSFQCLTFDEKNFKCEILSEQQDREEFESLTEDESYKGESSSESLTHTKERPFKCDQCSMAFTTKNILKNHFITHSDARPYKCEHCSKTFSRKRTMVNHLNTHTGERPFKCDYCPKSYILKDVLKYHLRTHTGERPFECDYCSKTFSRRNTLNDHLDTHTGIRTFKCSYCPKTFARNSTLNNHLRTHTVENQLKCFQCSKTFSNKKSLTDHLLSHTGEQPYQCFNCPKTFSYKSSLRNHLNVHSGERTLKCSYCSMTFSQNTTLNNHLRTHTGERPYQCPDCPKSFTQTSSLKNHLRTHTGECPFKSELAGVSDIPSPPPVKASKKGAAGKAKSQAAIAEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919239;
- 90% Identity
- iTF_00919239;
- 80% Identity
- iTF_00919239;