Lmom000322.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000587.1:133185-134788[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.7e-17 2e-13 49.8 0.0 2 45 344 387 343 387 0.94 2 3 0.016 37 4.2 0.0 27 37 416 426 412 431 0.89 3 3 1.2e-19 2.7e-16 59.0 0.0 2 41 453 492 452 495 0.95
Sequence Information
- Coding Sequence
- ATGAATAACCTAAAATGGATGGGCCACTCGGCGACAATTATGGACATACAACGATCTCTGCGCGACGACAACGAAACCTGCGAGGTTGTCTTGGCGGCCAAAGATGGCATCAGTGTTCGTGCCCATCTTTTTGTGCTGAGCACTTGCAGCGATTTGATGCGTAATCTTTTGGTGGATGTGCCGCCCGGGCAGGAGGCCACCATCATATTGCCGGATATACGCGGTGAGCTGCTGGAGACCATGTTGTCGTTCATTTATATGGGCGAGACGAGTTTGCCCTCGGCCTCGTTAACCGAATTTCTGGAGGCCATCAATCTGTTGGGCATCAAATCGGCCATTAGCTTCGAGTGTAATCCCACTTCCCAAATGAATGCCTCGAATGTGGATCAAGTGGTGGCTGTGGAGGCGGCCAAATCCATTAGTGGCCTACAAATTGCTTCAACTGAACTGATAGAGGATGAAGAAGAGCCGGCAGTGCAGACACAGGTAACGGAAAGTGCCGTAATGGAAGATCCTCAGCCCCAACAGGCTACACCGCCCACCCGTGCCCTGGAATTTCTGGATATGTACAATGATCAGCCGAAAATTACTTACTCCATCGAGCATATGGGCGGCAACACCAGTGGCAATCAGTATATTTTAACCGAGAACACTGGCACCTTTACCATCACCCAATCGGCAGCAGGGGGCATATCCAAATTGGATTCCAGCCAGGTAGATATGGCCGAAGATGATGACGCTGAAGCTGATGTCACCGATGAGGTGGAGGAACAGGAAACGCAGTTGATTGAAGAGGAATATGTGCCGGCTGACCCTTTGATAGAAATGCAAACCGATGCCGAAATGGTAGAGGGTAAATATGAAGAGGAAGATGAAGCCGAAGATGAAATGGAAATAGATATAAAGCCGAATCTGGTGCCAGCCACAAAAATAAAAGCACGTCGTCCGGCCCCAGCCAAGATTGCCAAGCGACAATCCATCAAGCAGCAGCAATTTGTGGCCCTCAAGAATGAACCCAAGGATGGCATCAACGATGCTCTGGAATTGGCCGCCGAAGCTGTACTCCAAGAGGGTCTCAGTCTGCAAAAGGCCGCCGATCGTTTTGATATATCCAAAACCGTGCTATGGCGTCGCGTGCGCACAAATCCCGAGTACTTGCGCAGTAATCGCGAGAAGCCCTCTCTTTCGGAAGCCTACGAGCGTCTGAAGAGTGGCGACTCGCTTAAGAGCATAAGTCAGGATTTGAATATACCCATGTCCACGCTGCATAGGCATAAGGTGCGACTGGCGGCTCAGGGTCGTTTGCCCGATTTCGTGGCCTGCCGTCGACGGGATAGCACACCTAAGGATGAGTTGCGCGATAAGTTGGCCAAGGCCGTGCATGCGTGCATCAACGAGGGCATGTCCCAAAATCATGCAGCCAATCTCTTTGAGATACCCAAGAGCACACTGTGGCGCCATCTACAGCGTCGTGTGGCCGAAACGGAACGTAAAGTCAAAATGGAGCAGCTGGATGATGAGGAAGAGGATCTTCTTAACTAA
- Protein Sequence
- MNNLKWMGHSATIMDIQRSLRDDNETCEVVLAAKDGISVRAHLFVLSTCSDLMRNLLVDVPPGQEATIILPDIRGELLETMLSFIYMGETSLPSASLTEFLEAINLLGIKSAISFECNPTSQMNASNVDQVVAVEAAKSISGLQIASTELIEDEEEPAVQTQVTESAVMEDPQPQQATPPTRALEFLDMYNDQPKITYSIEHMGGNTSGNQYILTENTGTFTITQSAAGGISKLDSSQVDMAEDDDAEADVTDEVEEQETQLIEEEYVPADPLIEMQTDAEMVEGKYEEEDEAEDEMEIDIKPNLVPATKIKARRPAPAKIAKRQSIKQQQFVALKNEPKDGINDALELAAEAVLQEGLSLQKAADRFDISKTVLWRRVRTNPEYLRSNREKPSLSEAYERLKSGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVAETERKVKMEQLDDEEEDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917324;
- 90% Identity
- iTF_00915460;
- 80% Identity
- iTF_00919172;