Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2e-12 4.5e-09 35.9 0.0 1 41 79 120 79 123 0.90

2 4 1.2e-14 2.7e-11 43.0 0.1 2 39 134 171 133 174 0.94

3 4 2.6e-18 6.1e-15 54.7 0.0 1 45 188 233 188 233 0.98

4 4 2.7e-20 6.2e-17 61.1 0.0 1 43 240 283 240 284 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2e-12	4.5e-09	35.9	0.0	1	41	79	120	79	123	0.90
2	4	1.2e-14	2.7e-11	43.0	0.1	2	39	134	171	133	174	0.94
3	4	2.6e-18	6.1e-15	54.7	0.0	1	45	188	233	188	233	0.98
4	4	2.7e-20	6.2e-17	61.1	0.0	1	43	240	283	240	284	0.97

Coding Sequence: ATGGAGATTGATCCGAGTCAAATAAAGCATGAGCCAGGCATGATAATAACGCCAGAGATTGTTAATATGATGTCGTCTGGGCATATGGACATGTACAACTCGGATACGAGCGAGGATTCCATGATGATCGCCAATGGATCACCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGCAACATGGCCTGGGTGGCAGCAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATTCCATCGACCACGCTATGGCAACGGGCTCACCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCATGGAACGAAGATGCATTACAGAATGCGTTGGAGGCATTGCGATCGGGTCAAATATCTGCGAATAAAGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTATACAAGATAGCGCGTCGGGAGGGCATTCGTTTGGCGGCGCCATTTAATGCTGCCCCAACCACATGGACGCCCGAGGATTTGGAGCGTGCATTGGAGGCAATACGAGCGGGTAATACGTCTGTACAGAAAGCGAGTGCCGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGCGAGGGCATTGAACTATCGCGTTCGAATCCCACACCATGGTCCGAAGATGCCATGAACGAGGCCTTGAACTCAGTGCGCGTTGGCCAAATGTCTATCAATCAGGCGGCCATACACTATAACCTGCCCTATAGCTCGCTCTATGGCCGCTTCAAACGTGGCAAATACGATGTGGTGGCCAATACAAGTGGAGTGGCGCTAATGAATACCTCAGGCAATACAACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAAAATTCGGTAGGTAGCCACCAAACATAA
Protein Sequence: MEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALMNTSGNTTGSIEIIEHSQENSVGSHQT

Sequence clustering based on sequence similarity using MMseqs2