Lmag021004.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- grn
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010003918.1:37360-98245[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3 1.3e+04 -3.4 0.2 6 19 243 256 242 257 0.77 2 3 2.3e-19 9.5e-16 57.8 4.7 1 35 434 467 434 468 0.98 3 3 7.9e-19 3.3e-15 56.1 6.3 1 35 494 527 494 528 0.97
Sequence Information
- Coding Sequence
- ATGGATATGACCTCAACAGCGGAGGCTGCCGCTCGCAGCTGGTATGACAGTCCGCGCttaggcggcggcggcggcggttcACCACACCATTCTAATGGTCTTGGCAGCACGGGCAGCAGTCTGGCCGCCCATAGTCATCACAGCCTGTCCAGCGGCGCCTCCTCGGCCGGCAGCAGTGTGGGCACTGGCCTGGGCGGTGGTGCCAATGCCGGATTGGGTCTGGATACCAGCGATATGAGTGCGTTCTATGCGCTGGAAAGTAATGGCCATCATCGCAGATATTATCCAAGCTATCATCAGCACACTTCCCGCATGCCCTCGTCACATGCCACGCCCCAAGTGTGCCGGCCGCACTTTCATACACCGCTGAGTCCCTGGCTGACCAGCGAGCACAAATCGTTTGCACCCGCCAGCGCCTGGAGCATGGGGCAGTTTGCCTGCCCGCAGGAGCCGCAGGTGGATCACAAGCTGGGCCAAGTGGGCCAAAGCCATCAGACGACAGCGGCCGGCCAGCATTCGTTTCCCTTTCCTCCGACACCGCCAAAGGACTCGACGCCCGACTCAGTACAAACGGGTCCATCCGAATACCAGGCGGTGATGAACGCGTTTATGCACCAACAGGCCACAGGCTCTACCTCACTGACGGACGCCAGCTGTGCGCTGGACATCAAGCCCTCGATACAAAATGGAGCGGGCGGCACATCCTCGGCGCACAACGTACCCAATCAGACATCAACGCCAAAGCAGCGCGAAGGTAGTAGCAACCAGAACAATAACACTAGCTCCACCACCAGCAGcggcagtagcagcagcaacaatgcCAGccagcaactgcagcagcagcagcagcaagcctCCTCCGCCTCCACCTCCGCTTCAGCCTCCACCTCAAACGGCCTGTTCGATGGCACTGCCCAGGCTCACTATGCGGCCAACAATGCGGCGGCCAATAGCACGGGCTATGACAGCAGCAGCTATGCCTCCTACCATCATGCGGCCGCTCACCATCAGGCGGCTGTGGCGGCGGCCAATATGTTTCAAAGTTCCTCGGTGGCAGCGGCGGCGGTTAGGCATAGCATGGGTGCGGCTGCAGCGGCGGCAGcgcaccatcatcatcatcacagtAGTCACCATCAGTCCTCCTCCTCGGGATCAAGTGGGGGGGGCATGCATGGCTCCGGTATGGGTGGCATGGGCAATGGCAGCTGTGGCCAGGATATTAAGCCGGGCGGCGGCAACAGTGGACTCGATGTGAAGCCCGTGCGAACGAAACCCAGGACAAGTGCTGAGGGTCGCGAATGCGTTAATTGTGGAGCCACCTCAACGCCATTATGGCGACGCGACGGTACCGGACATTATCTATGCAATGCCTGTGGCCTTTACTACAAAATGAATGGCCAGAATCGACCACTGATCAAGCCAAAGCGAAGACTGACGCTGCAGTCCTTGCAGAGTGCGGCCAAAAGAGCTGGCACATCCTGCGCCAATTGCAAAACCACAACCACAACCCTTTGGCGGCGGAATGCCAGCGGTGAACCAGTATGCAATGCCTGCGGATTGTACTACAAGCTGCATAATGTCAATCGTCCGCTCACCATGAAGAAGGAGGGCATACAGACGCGTAATCGCAAACTCAGCTCCAAGTCCAAAAAGAAGAAGGGTCTGGGTGGCGGTTGTCTGCCCATTGGCGGTCATCTGGGTATGGGTGATTTCAAACCGCTGGATCCGTCCAAGGGCTTTGGTGGCGGTTTTTCCGCCTCGATGGCGCAACATGGACACCTTTCCAGTGGTCTGCATCCGGCACATGCGCATATGCATGGCAGTTGGTATACCGGCGGCATGGGAGCATTGGGTGCGTCGAGTGGTCTGCAGGGAGGCTTCTCAACGGCCGGCTCACTGAGTGGAGCTGTGGTGCCACACTCGCAGCCCTATCACCTGGGTCTCGGATCTATGGGCACTTGGCGTACAGACTATACGTGA
- Protein Sequence
- MDMTSTAEAAARSWYDSPRLGGGGGGSPHHSNGLGSTGSSLAAHSHHSLSSGASSAGSSVGTGLGGGANAGLGLDTSDMSAFYALESNGHHRRYYPSYHQHTSRMPSSHATPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQFACPQEPQVDHKLGQVGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGAGGTSSAHNVPNQTSTPKQREGSSNQNNNTSSTTSSGSSSSNNASQQLQQQQQQASSASTSASASTSNGLFDGTAQAHYAANNAAANSTGYDSSSYASYHHAAAHHQAAVAAANMFQSSSVAAAAVRHSMGAAAAAAAHHHHHHSSHHQSSSSGSSGGGMHGSGMGGMGNGSCGQDIKPGGGNSGLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLSGAVVPHSQPYHLGLGSMGTWRTDYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919543;
- 90% Identity
- iTF_00914975;
- 80% Identity
- -