Lmag015530.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- ken1
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010002519.1:824589-826683[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.79 59 5.1 9.7 2 23 174 195 173 195 0.96 2 12 0.00046 0.035 15.2 0.1 1 23 201 226 201 226 0.93 3 12 0.015 1.1 10.5 0.1 3 23 235 258 233 258 0.93 4 12 0.0004 0.03 15.4 0.8 2 23 271 292 270 292 0.96 5 12 1.4e-05 0.0011 20.0 0.6 1 23 299 321 299 321 0.98 6 12 0.0036 0.27 12.5 0.2 1 23 327 349 327 349 0.98 7 12 0.11 8.3 7.7 1.4 1 23 355 378 355 378 0.97 8 12 0.011 0.8 11.0 3.9 1 23 384 406 384 406 0.96 9 12 0.0013 0.097 13.8 2.9 2 23 413 434 412 434 0.96 10 12 0.00015 0.012 16.7 1.7 3 23 523 544 521 544 0.95 11 12 0.0045 0.34 12.1 1.1 1 19 550 568 550 572 0.95 12 12 4.1e-06 0.00031 21.7 0.5 1 23 578 600 578 600 0.98
Sequence Information
- Coding Sequence
- aTGAACCTGGAGGAGGAGGATCACCTGGAGCTGGAGGAGGATCACTCCTTATGTCGCATTTGCTTAATATACCTTGGACACAGTCCTAACTTTACTTATGACCTGTTTCAAGATCCCGATCTGGCCGAGATGCTGACACTTTGCACGGGATTACGGGTGGAACGAGAGGATGGCCTCCCAAGTCGGATGTGCAGTAATTGTTGTGGACGACTTAAGAATCTCAATGAGTTTCAAAAACTGTGCTTAGAGTCGGCAAAGAAGTTCAGGGACATGGTGAGCAGCAGTTTTGTCGATCCAGTGACCGAACGGGAGGAGGACGAGGCGGAGGTTAGCTATGATCCCTTGCTGAATCATAAAATGGAAATAATCGATAACGAAGATGAAGTGATCAAAATGCTGGAAACGGTGGACAAGGAGCAGAGCTCTAGCGATGATGATTTGCCTCTGGCACAGCGCTgggaggaggagcagcagcaacaggatCGTTCCAAACGCAGAAGAAGGCTGGCCACCCTACTCACCTGCCACATTTGCCAGAGAAAGTTCAAAATGCGTTGCAAATTCGATGAGCATATGAAGCATCACAATGAACTCCTGCCTTTCCAGTGCCCGGAAGACAGCTGCAAGAAGGGCTTTACCACTGCAAGTGCCTTGCGCCTACACGTGGACTATGCGCATATCAAGCAGTCCGTTGAGCTTCCCTGCAGCGTCGAAGGTTGCAAGTTGGTTTTCCCTCGCGTGCGTCTGCTCACCATACACCTGAAGAAGGTGCACAATTTAAACCGTCCGAGTGGTCCTCGATTGAAACAACCCTGCAGCGAATGTGGCATGGTCTTTCGCTGTCCCGGGGCGCTCAAGAAGCACATGTATAAGCATACTGGCAAAGAACTGCCCTATCCGTGCAACATTTGTGGGAAAGGATTTCACATTAATAGCGCCCTGAAGAATCATTTGCTGCGGCATGCGGGCATCAAAAACTATGTGTGTCCCTACTGTGGTGTGGGCAAGACGACGCGGCAGGAGTGGAGTAAGCACATGCTCACCCACACCCAGGAGAAGCAATTCAAGTGTGAGATCTGTGCACATGCCACGCATACGAAACGAGCACTGGATAATCATGTGAAAATTGTGCATGAAAAGATTAAGAACTATGCGTGTCAATATTGTGGCAAAACCTTCGGCAAATCGCATGCTTGCAAAATCCATGAGATGACCCACACGGGAGAGAAGCGTTGCGAGTGTAAGGTGTGTGGTAAAAAGTTTCTCTACACGGAGAGTTTGACCAAACATTTGAAAATCCATGAGAAAAGTGTGGAGAGATCTTTGGAAACCTATCGCCAAAGGCAGGGCCAGGCGGGTCTGACCGATTTTCCTCAATCGGATGCGACCGATCATTTGCTGAAGGTTTGTGCCGAGTCGGTGGCCACCATACCACGAGATCCTCGTCGCGTTGAACGCGTGGATATCTCTAAATTGGCCGGCACTGTGGTTAATCCCATACCCACTGTTTCCTTGCCCCCTGCCTCTTTCATTGCTCCTCCTAAAGCTAAAGAGGGCATGCATTTGTGTCCCAATTGCAATCAGGGGTTCACCAACCTGGGCAACATGAAGCGACACTACAAGAGTGTTCACGAAAAGGTCAAAGATTTCGAGTGTCGTTTCTGCTCTCGACGATTTGCCAACTCGCAGTCTCTCAAGCAACACGAATGGATTCACACCGGAGAGAAGCCATATGCCTGTAAGATTTGTGGCAATCATTTTCGCCAAGAGGCGGCTCTAATCCGACATCAGAGAGTGCATGACGAGAAGCCGCCGAAGCCGGTCAAGCTGCCCAAAGAGATTACGGAAAAAGTGCGCGAAAAGGAATTGCAGAAAAACGAACGAAGACGTCAAGTGGAGGCACTGCGTCTTGAAATAGCCGAGGTGGCCAAAGAAGAGCTGAAGGATTTGGCCAAGCAGAAAGCTCTGGAAAAGCAACAGAATACATATGAACAATATCAGGCAGCGGCCGAGGAAGCGGGTCATTTAAAATGA
- Protein Sequence
- MNLEEEDHLELEEDHSLCRICLIYLGHSPNFTYDLFQDPDLAEMLTLCTGLRVEREDGLPSRMCSNCCGRLKNLNEFQKLCLESAKKFRDMVSSSFVDPVTEREEDEAEVSYDPLLNHKMEIIDNEDEVIKMLETVDKEQSSSDDDLPLAQRWEEEQQQQDRSKRRRRLATLLTCHICQRKFKMRCKFDEHMKHHNELLPFQCPEDSCKKGFTTASALRLHVDYAHIKQSVELPCSVEGCKLVFPRVRLLTIHLKKVHNLNRPSGPRLKQPCSECGMVFRCPGALKKHMYKHTGKELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHMLTHTQEKQFKCEICAHATHTKRALDNHVKIVHEKIKNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVERSLETYRQRQGQAGLTDFPQSDATDHLLKVCAESVATIPRDPRRVERVDISKLAGTVVNPIPTVSLPPASFIAPPKAKEGMHLCPNCNQGFTNLGNMKRHYKSVHEKVKDFECRFCSRRFANSQSLKQHEWIHTGEKPYACKICGNHFRQEAALIRHQRVHDEKPPKPVKLPKEITEKVREKELQKNERRRQVEALRLEIAEVAKEELKDLAKQKALEKQQNTYEQYQAAAEEAGHLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916569;
- 90% Identity
- -
- 80% Identity
- -