Basic Information

Insect: Lordiphosa magnipectinata
Gene Symbol: -
Assembly: GCA_018904285.1
Location: JBAMBO010003831.1:76488-78450[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.2 3.2e+02 2.8 0.3 1 16 41 56 41 58 0.81

2 10 9.6e-05 0.0072 17.4 2.6 2 23 160 181 159 181 0.98

3 10 0.00012 0.0093 17.0 0.7 1 23 207 228 207 228 0.98

4 10 8.8e-05 0.0066 17.5 2.2 1 23 237 259 237 259 0.99

5 10 0.00068 0.051 14.7 0.7 1 23 286 308 286 308 0.97

6 10 1.7e-07 1.3e-05 26.0 0.5 1 23 314 336 314 336 0.98

7 10 0.00074 0.056 14.6 4.9 1 23 342 364 342 364 0.98

8 10 2.5e-05 0.0018 19.3 1.8 1 23 370 392 370 392 0.98

9 10 0.00033 0.025 15.7 0.1 1 23 396 418 396 418 0.97

10 10 0.00043 0.032 15.3 0.3 1 23 441 464 441 464 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.2	3.2e+02	2.8	0.3	1	16	41	56	41	58	0.81
2	10	9.6e-05	0.0072	17.4	2.6	2	23	160	181	159	181	0.98
3	10	0.00012	0.0093	17.0	0.7	1	23	207	228	207	228	0.98
4	10	8.8e-05	0.0066	17.5	2.2	1	23	237	259	237	259	0.99
5	10	0.00068	0.051	14.7	0.7	1	23	286	308	286	308	0.97
6	10	1.7e-07	1.3e-05	26.0	0.5	1	23	314	336	314	336	0.98
7	10	0.00074	0.056	14.6	4.9	1	23	342	364	342	364	0.98
8	10	2.5e-05	0.0018	19.3	1.8	1	23	370	392	370	392	0.98
9	10	0.00033	0.025	15.7	0.1	1	23	396	418	396	418	0.97
10	10	0.00043	0.032	15.3	0.3	1	23	441	464	441	464	0.96

Sequence Information

Coding Sequence: ATGTCAGAGATTTACTTCGAGGAAGCTTCTACCATTACGTCTGAGCACGTGCAGCTACAGCAGCCAGATGACAATGACGAGGATTACTTTATAGCAGAAACTGCAGCCCAGGAGCTGTACTACCATTGTGAAAACTGTGGCAATCACTATGAGTCCCTAGAGGCATATACCAAGGAGCATAATGGGCAGCCGGGTAGCTGTGGTGGTCCCAAGTTAAAATGCGAAGAACTGGAGAACGAGATATTCGAAGCAGATGCTCCGCTTTGGGAACTGATAGAGGAAGAGCCACCTGTCAAGACTGAGGAGGCGGAAGTGGAACAGGAGCGATATTTCTGCTATGATTGCCATAGCATATTCGAGAATCGTTGCTCTGCCGAGGATCATATTTGTCCTCAAGTAGAGGTTGGCAGTGCCGACCCCAAGAAATCCACTCGACGCAAGGCTGTCCCACCAACAAAAGATGCCTCATTTTTTACCCAATGCGAGATATGCAATACCAAATTCAGTTCATCGAAATCGCTTAAGTTTCACATGCGTATGCATAAGCAGCTGGTGACCAAAAGCATACAGGATGCTCTGCCCGTGGGAGCCCATCAACAGTACAACGAACTGGATCAGTTCTATTGTGAGATCTGCAATAAGAGCTTTGATGAGAATCTTTTGGAGGTGCACAAACGGATGCATCAGCAGCAGTCCAGGACGGAGCAGTACAAGTGCAGCAATTGTAATCGCCAGTTTGACAATCTAACCAACTATGAAATGCATTTGAAAATGCATGAGAAACAATCAACGGCGACGTCGACGGCGGCAGGCAAACGTTCTTCCCCCCTGGCTGGGAATAAGGAAAAGCCCGGTTTTGCCTGTCAATATTGCGAACGTGTCTTCTTTCGTCCCTATGAGAAGGTCAAACACGAACGGGTTCATACGGGCGAGAAGCCCTACGCCTGCGAGGTGTGCGGCAAAACGTTTCGTGTCTCCTACTCACTCACACTGCATCTCCGTACGCACACCAACATAAGGCCATATGTCTGCACCATTTGCAATAAGCGCTTTAAATCGCATCAAGTGTATGCCCATCATGCACGGACTCACAGCTCGGATCGTGAATATGCCTGTGATATGTGCCCCAAGACATTTCGCACCTCCGTTCAGTTGCATGGCCACAAGAATACGCATACCAAACCCTACAACTGCGCCGTTTGCAATCGTCCATTTGCCTCCTTGTATGCCGTTAAAGCGCACATGCTTAATCATCAGGAGACGGGAGCTGCAACCTCTTCAAAGTCTATTACTGGCCATAAAAACCAAATGCTAAATAAATTCTGTTGTGTGATCTGTGGAGCCGAATATGCTCGTCTCTTTGCCCTGCGTCAGCATATGAACTCAGCCCATGCTATGGAGGCTATTCACCCGGAGCAGCATGAAGTGGAGAATGTTAGCTGTATAACCGATGACACGGAGGCAGCTGTGCTTTTAGCAGCCGCTGAGGCAGATGCGGCCTATATACAATCGGTCGTCAACGATGTGGATATAGCAAGCACTGTGCCCAGCTATGAGGAGGAGAGTACAGAGTTTCAGTTTCACAGCGAAGAGATCATTACGGATTGGCTTAAGTGA
Protein Sequence: MSEIYFEEASTITSEHVQLQQPDDNDEDYFIAETAAQELYYHCENCGNHYESLEAYTKEHNGQPGSCGGPKLKCEELENEIFEADAPLWELIEEEPPVKTEEAEVEQERYFCYDCHSIFENRCSAEDHICPQVEVGSADPKKSTRRKAVPPTKDASFFTQCEICNTKFSSSKSLKFHMRMHKQLVTKSIQDALPVGAHQQYNELDQFYCEICNKSFDENLLEVHKRMHQQQSRTEQYKCSNCNRQFDNLTNYEMHLKMHEKQSTATSTAAGKRSSPLAGNKEKPGFACQYCERVFFRPYEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHTNIRPYVCTICNKRFKSHQVYAHHARTHSSDREYACDMCPKTFRTSVQLHGHKNTHTKPYNCAVCNRPFASLYAVKAHMLNHQETGAATSSKSITGHKNQMLNKFCCVICGAEYARLFALRQHMNSAHAMEAIHPEQHEVENVSCITDDTEAAVLLAAAEADAAYIQSVVNDVDIASTVPSYEEESTEFQFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00916548;
90% Identity: iTF_00918401;
80% Identity: iTF_00918401;