Lmag009317.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa magnipectinata
Gene Symbol
-
Assembly
GCA_018904285.1
Location
JBAMBO010001589.1:60490-63279[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.8e-07 2.1e-05 25.4 0.7 1 23 177 199 177 199 0.99
2 16 0.49 36 5.7 2.5 2 23 231 252 230 252 0.95
3 16 0.069 5.2 8.4 2.4 1 23 334 357 334 357 0.97
4 16 0.085 6.4 8.1 0.5 1 19 364 382 364 385 0.93
5 16 0.016 1.2 10.4 3.4 1 23 394 416 394 416 0.95
6 16 1.7e-05 0.0013 19.7 1.1 1 23 423 446 423 446 0.96
7 16 0.00013 0.0096 17.0 1.4 2 23 454 475 453 475 0.96
8 16 0.0047 0.35 12.1 0.1 2 21 502 521 501 522 0.94
9 16 0.023 1.7 9.9 1.3 1 23 565 588 565 588 0.96
10 16 0.0037 0.28 12.4 1.4 1 23 625 648 625 648 0.96
11 16 0.00028 0.021 15.9 1.4 2 23 668 690 667 690 0.95
12 16 0.00085 0.064 14.4 1.2 1 23 704 726 704 726 0.95
13 16 6.9e-05 0.0052 17.8 0.6 1 23 732 754 732 754 0.99
14 16 4.6e-07 3.4e-05 24.7 2.6 1 23 760 782 760 782 0.98
15 16 0.0014 0.11 13.7 5.2 1 23 788 810 788 810 0.96
16 16 0.00017 0.013 16.6 0.6 1 23 816 840 816 840 0.90

Sequence Information

Coding Sequence
ATGAGATTACCAGTCGTGTGTCGCACTTGCGATACAAGTGCCAGGAGGGCGAATAAACTGTTAAGCCTAGACACGCCCAGCAAGAAGTGCCCAGACAAGTCGCTGGCGATAATCCTCAGCGAACTGACCAACATTGATTTGAATGTACCCTTAGGAAAGAATTTGCCACAATGCCTGTGCACCAATTGCTCCAGAAGACTGCTGTCAGCATTTGAATATGTAAAACAGGCTTTGGCTGCCAATGATCTGTTGATGAAGCATCTCAAGAAGACGGCACCCAGCAGCGATTGTTTGCAAGAGACCCCCATGGAACTATATGCCGAGCTACCTGTGGAGGTTAAAATGGAAACGGAAGATTCTGAAGATGTGGGACAAAATGGGTCGACTGTCAAGTTGCTTATGGACAACAAAAGTTCAGTAGATCCCTTCAAGCAAGAGGAGTACTCAGAGGACGAGACCTCAGAATCTCAGACGGATGACGAACAACCTTTGGGCAATCGCATAGCAACTCAAGACCAAAAACGAACATATCAGTGCACCGACTGCTCAAAAATCTTTAATCGTGCTGGAAATTTAAAGCAGCATCTTAAAGTGCATGCGGATCCCAAACCTCCGGCCAGTATCAGTGAGCACAAGAAGGCCAAGGCGATTGATCTAAACCTGTGCAAGCCTAATGGTTGCAAGCTTATCGAGTGCATGATCTGTCATAGTCAATTTCATAAAATTGCCTCTCTTCGACGCCATTTGGAAAATCATCCGGAAATCGTTATGTTGGAAGGTGATCACCATGAACTTTTTTACCCTGATGTCAAGGATGTCAGCCAGGAACACTTAAAGCATTTAATATGCAAAGATTTGTCTAGTGGACACTATCAGCGATTCTATTCAATAACCAATCAGTCTGGTTATGAGATTAATCTAGACAGCTCAGAGACCGAAAGCGAGCCAGAAACGGAGGAGGAACAGCATTGTTCAACAAGCAGATTACGCCCTGCCAAGTACGAATGTGAGCTGTGTCAGCAGAAACATGCGAGAAAGTATCAACTTTACGATCACCAGCGTCAAGCACATCCCTGGCTAGAGGCTCCTCATGTGTGTGGCCGTTGTGATGCCCGATTTGTCAGTCTGCAGCTACTAAGACATCACAATGAGTCGCAGTGTCGGAATGCACAGAAACGTTTTCTTTGCCACAAATGTCCGCTGCGTTTTCGCTGGAAACGCAATCTCAGGGCTCATTTTCGGGAGCACCGAATAACCAACCAAATCCATGAGTGTCCGGATTGTAAACGTGTGTTTGATAAAAAGAAATCCCTAACTGTCCACCTGCTGAGCGTACATGCCGAAGAATCTAAACTGCTGCCGTGCCAATGGTGTAGTCGCAAGTTCTATCGTCGAGACTATTTGGTTAAGCATTTGAAGCGTCATGGCTTACGGGAACAGGATATTCCGCTGGCCGAAACTCTTATAGCGGCTACCTCCAAACCCCATGGAATTAAGAGCATTTCCTGTAAAATTTGTAATCTTCAATTCGAGCGCATTAACGATCTGCGTGCTCACATTAAACTGGATTTAAAGCTACATCAAAACTACGCATCTCTGCACAACTATTCCATAACTAATGAATCTGGCTTTGAGCTGCATCTGAACGATTCAGAGACGGATGATGAAATAAGCATGGGCCACCGTGAGATGTATATATGTGAACTGTGTAGTGTGCAGTGTCGGCGCAAGTACGAAATGATACTGCATCAGCGTGCCATGCACACTTTTGACAAGATGCCTCATGAGTGCGACAAATGTGTCTTCAAATGTGTATCCAAGAGCATCATGGATCATCATTGGCTGGCGCAATGCGGCAGCTTGGAGAAACAATATACGTGCAGTCATTGCAGCTACAAGTTCATGTGGCCTGACAATCTAGAGCAGCACATACAACTGCAGCATGGACAGATTACGACCACAATTAGTGTGCAGCAGTCAGTGGAAGCTGTGTCTGTACTTCAGTGTCCACACTGTGATCGCACCTATCAACTGAAATCCAGGCTTAACAATCATATACGGGATGTTCATGACAATGGCGACCGCAAGCGTAAGGAGGCTCTCAAACAGTTCCTCTGCTCGCTGTGTGGTTGTGAAACCAAATCAGCCGCCAGCTTGGTAACCCATATGCGTCGTCATACCGGAGAGAAACCCTTTAAATGTGATTTTTGCGAAATGGCTTTTCCACGACGCTCGGATATGATATCGCATCGACGGATTCACACTGGAGAGAAGAACTTTCATTGTACAGTCTGTGGCAAAGATTTTGCCCGTTCCGACAAGCTAAAAAGGCACATGTTGACTCACAGCGGTTTGAGACCGCACGCCTGCAACTACTGCGAGAAGAGCTATCGTCATACCAAGGATCTGAAGTTGCATCTGCAGCAACATACGGGCGAGTGTCCTTTTATCTGTGGCACTTGTGGCGAACGATTTATCCAAAGTACAACCCTGGAGAAGCATCGCATGATGAGACGCCATTTCGATGAAGTAGAAAtagaataa
Protein Sequence
MRLPVVCRTCDTSARRANKLLSLDTPSKKCPDKSLAIILSELTNIDLNVPLGKNLPQCLCTNCSRRLLSAFEYVKQALAANDLLMKHLKKTAPSSDCLQETPMELYAELPVEVKMETEDSEDVGQNGSTVKLLMDNKSSVDPFKQEEYSEDETSESQTDDEQPLGNRIATQDQKRTYQCTDCSKIFNRAGNLKQHLKVHADPKPPASISEHKKAKAIDLNLCKPNGCKLIECMICHSQFHKIASLRRHLENHPEIVMLEGDHHELFYPDVKDVSQEHLKHLICKDLSSGHYQRFYSITNQSGYEINLDSSETESEPETEEEQHCSTSRLRPAKYECELCQQKHARKYQLYDHQRQAHPWLEAPHVCGRCDARFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKRNLRAHFREHRITNQIHECPDCKRVFDKKKSLTVHLLSVHAEESKLLPCQWCSRKFYRRDYLVKHLKRHGLREQDIPLAETLIAATSKPHGIKSISCKICNLQFERINDLRAHIKLDLKLHQNYASLHNYSITNESGFELHLNDSETDDEISMGHREMYICELCSVQCRRKYEMILHQRAMHTFDKMPHECDKCVFKCVSKSIMDHHWLAQCGSLEKQYTCSHCSYKFMWPDNLEQHIQLQHGQITTTISVQQSVEAVSVLQCPHCDRTYQLKSRLNNHIRDVHDNGDRKRKEALKQFLCSLCGCETKSAASLVTHMRRHTGEKPFKCDFCEMAFPRRSDMISHRRIHTGEKNFHCTVCGKDFARSDKLKRHMLTHSGLRPHACNYCEKSYRHTKDLKLHLQQHTGECPFICGTCGERFIQSTTLEKHRMMRRHFDEVEIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-