Lmag009318.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa magnipectinata
Gene Symbol
-
Assembly
GCA_018904285.1
Location
JBAMBO010001589.1:65139-67990[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.4e-07 1.8e-05 25.6 1.4 1 23 185 207 185 207 0.98
2 16 0.0073 0.55 11.5 0.3 2 23 239 260 238 260 0.96
3 16 0.0028 0.21 12.8 0.6 1 23 338 361 338 361 0.95
4 16 0.088 6.6 8.1 0.5 1 19 368 386 368 389 0.93
5 16 0.011 0.85 10.9 2.1 1 23 398 420 398 420 0.97
6 16 0.0014 0.1 13.7 5.1 1 23 427 450 427 450 0.93
7 16 7e-05 0.0052 17.8 1.4 2 23 458 479 457 479 0.96
8 16 0.0045 0.33 12.1 0.1 2 21 506 525 505 526 0.94
9 16 0.0022 0.16 13.1 2.3 1 23 582 605 582 605 0.98
10 16 0.033 2.5 9.4 2.6 1 23 642 665 642 665 0.95
11 16 0.00018 0.014 16.5 1.6 2 23 691 713 690 713 0.95
12 16 0.00079 0.059 14.5 2.0 1 23 727 749 727 749 0.95
13 16 0.00024 0.018 16.1 0.8 1 23 755 777 755 777 0.99
14 16 6.8e-07 5.1e-05 24.2 1.8 1 23 783 805 783 805 0.98
15 16 6.5e-05 0.0049 17.9 3.1 1 23 811 833 811 833 0.97
16 16 4.5e-05 0.0034 18.4 0.6 1 23 839 863 839 863 0.90

Sequence Information

Coding Sequence
ATGAAGTTACCTGCCGTCTGTCGCACCTGCGATGCAAGTGCCAGGGGGGCGAGAAAGCTGCTTAATCTGGACACGCCCAGCAAGGAGTTCCCAGATAAATCGCTGGCGAATATACTCTGCGAACTGACCAACATTGATCTGAATGTACCCTTTGGACAGAATTTGCCACAATGCTTGTGCACCAGTTGCTCCAAAAGACTGGTGTCAGCCTTTGAATATGTGAAACAGGCTTTGGCTGCCAATGAATTGCTGATAAAGCATCTCAACAAGAATGCACCCAGCAGCGATTGTTTGCAAGAGTCGCCCATGGAATTATGCGCTGATTTACATTTAGAACTGAAAATGGAAACGGAAGATGAAGAAGATATAACCTGCACTGAACTGCCCGAATTGGCTGTTAAGAGTTCTATAGATCCCTTAATAAAGTTGGGGACAATAAAGCAGGAACCTCACGCGTCAGAAGAGGACCCAGACTACGAGTCAAAAGACTCTGAGACGGATGGCGAAGATTCTGTGGACTATCAACCTGtcctaaaaaaacaaaaacgcaaaTTCCAGTGCGCCGAGTGTCCAAAAAGCTTTAAACGTGCCGCACACTTAAAACAGCATCTGAAAGTGCATGCGGATCCCAAGCCACCGGCCAGTGTCAGTGAGCATAAAAAGGCCAAGGCGATTGATCTCAATCTGTGCAAGCCCCATGGCTATAAGCTCATAGAGTGTTTGATCTGTCAGAATCAATTTAGTAAAATAGCTGATCTTCGCCGACATCTGGAGAAGCATCCGGAAATTGTTACGCTAACGGGGCAGAAACCGGAGGAGTTGGCCAAGTTATTCTATCCCAATGCCAAGGATGTTAGCGAGGAACAATTGATGCAATTGATACGCAAAGATTTGTCCAATGGCCAATATGACAATTTCTATTCAATAACCAATCAACATGGTTATGAGATGGAACTAGACAGCTCGGAGACGGAATGCGAGTCCGAAACTAAGGAGAAACCTAAAATCAAATACAATTGTGAACTGTGCCAGCAAGGATATGCGCGAAAGTATCAGCTTTACGAACACCAGAGTCAGGCTCATTCCTGGCTAGATGCTCCTCATGTGTGTGGCCGTTGCGATGCCCGATTCGTGAGCCTACAGCTGCTCAGACATCACAACGAGTCGCTGTGCCGAAATGTCCAGAAACGTTTTCACTGCCTCAAGTGTCCGCTGCGTTTTCGCTGGAAACAAAATCTCAGGGCTCATGTCCGGGAGCACCGGAAGAATATCCAACTTCATGAGTGTCACCACTGCAAAAGTGTTTTTCGCAATAAAAAATCTCTCACTATTCACTTGCTCGGTGTGCATGCCGAAGATTCCACTGTGCTGCCGTGTCAATGGTGTAATCGCAAGTTTTTTCGTCAGGACTATCTGGTAAAGCATCTGAAGCGTCATGGCTTACGAGAACAGGACATTCCATTGGCCGAAACTATCATAGCGGCCACCTCCAAACCCAATGGAATCAAACGAATAAGCTGCAAAGTCTGTAATATTCAGTTTGAGCGCATTTACGACCTGCGCGCTCACATACAGCAGGAGCTGATGATATCGAAGTCTTCATTGTCCTCTTCGTTGCATCAAACCTATGACTCGCTTCAAAACTATTCCATAACCAATGAATCCGGCTTTGAATTAAATCTGGGCGATTCGGAAACGGAGGATGAAATGACCGGCAACTGCTTGGGACAAGCACAATTGGTTTACATTTGTGAGCTGTGTAGTCTCCAGTGCAGGCGCAAGTACGAAATGATTCAACACCAAAGGACTGTGCATTGTTTTGACAAAATGCCTCATGAGTGCGACAAGTGTGTCTTCAAGTGTGTGTCCAAGAGCATCATGGATCATCATCGGCTAGCGCAATGCGACAGCTTGGAGAAAAAGCATACGTGCAGTCATTGCAGCTACAAGTTTATGTGGCCCGAGAATCTGGAGCAGCACATTCAACTGCAGCATGGCATGACAACCGTTGAGCAGCAGCAACCAACCAGTGAAAACTTGGAAGCCACCAAAGATGCGACGTCTGTACTCCAATGTCCTCACTGCGATCGCACTTATCAAATGAAATCGAGACTCAACAATCATATACGGGATGTTCATGTAAATGGCGATCGTAAGCGTAAGGATGCCGTCAAGTTATTTCTCTGCTCGCTGTGTGGATACAAGACCAACACTTCATATCAATTGCTTACTCATACGCGTCGTCACACGGGCGAAAAACCTTTCAAATGCGATCTGTGCGAAGCTGCCTTTCCCCGGCACTCGGAAATGATATCGCATCGGCGCATGCATACTGGAGAGAAGCCCTTCCATTGCACTGTCTGTGGCAAGGATTTTGCTCGCGCAGAGAAGCTGAAGAGGCACATGTTGACGCATAGCGGTTTGAAACCGCACTCTTGCAACTACTGCGAGAAGAGCTATCGGCAGGCCAAGGATTTGAAGTTGCATCTGCAACAGCACACGGGCGAATGTCCCTTCATCTGTGGCACTTGCGGTGAACGATTTATCCAGAGTAGCACACTAGAGAAGCATCGCATGATGCGACGCCATTTTGACGAAGTTGAAGTAGCTCCGAATTAG
Protein Sequence
MKLPAVCRTCDASARGARKLLNLDTPSKEFPDKSLANILCELTNIDLNVPFGQNLPQCLCTSCSKRLVSAFEYVKQALAANELLIKHLNKNAPSSDCLQESPMELCADLHLELKMETEDEEDITCTELPELAVKSSIDPLIKLGTIKQEPHASEEDPDYESKDSETDGEDSVDYQPVLKKQKRKFQCAECPKSFKRAAHLKQHLKVHADPKPPASVSEHKKAKAIDLNLCKPHGYKLIECLICQNQFSKIADLRRHLEKHPEIVTLTGQKPEELAKLFYPNAKDVSEEQLMQLIRKDLSNGQYDNFYSITNQHGYEMELDSSETECESETKEKPKIKYNCELCQQGYARKYQLYEHQSQAHSWLDAPHVCGRCDARFVSLQLLRHHNESLCRNVQKRFHCLKCPLRFRWKQNLRAHVREHRKNIQLHECHHCKSVFRNKKSLTIHLLGVHAEDSTVLPCQWCNRKFFRQDYLVKHLKRHGLREQDIPLAETIIAATSKPNGIKRISCKVCNIQFERIYDLRAHIQQELMISKSSLSSSLHQTYDSLQNYSITNESGFELNLGDSETEDEMTGNCLGQAQLVYICELCSLQCRRKYEMIQHQRTVHCFDKMPHECDKCVFKCVSKSIMDHHRLAQCDSLEKKHTCSHCSYKFMWPENLEQHIQLQHGMTTVEQQQPTSENLEATKDATSVLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKDAVKLFLCSLCGYKTNTSYQLLTHTRRHTGEKPFKCDLCEAAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARAEKLKRHMLTHSGLKPHSCNYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQSSTLEKHRMMRRHFDEVEVAPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00915511;
90% Identity
iTF_00915511;
80% Identity
-