Lmag013254.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa magnipectinata
Gene Symbol
-
Assembly
GCA_018904285.1
Location
JBAMBO010002164.1:385746-387155[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2.4e-06 0.00018 22.4 2.7 1 23 128 150 128 150 0.99
2 13 9.3e-06 0.0007 20.6 1.0 1 23 156 178 156 178 0.99
3 13 5.8e-07 4.4e-05 24.4 6.3 1 23 184 206 184 206 0.98
4 13 4.5e-06 0.00033 21.6 6.1 1 23 212 234 212 234 0.99
5 13 2.5e-06 0.00019 22.4 1.8 1 23 240 262 240 262 0.99
6 13 1.1e-05 0.00085 20.3 3.0 1 23 268 290 268 290 0.99
7 13 9.3e-07 6.9e-05 23.7 1.0 1 23 296 318 296 318 0.99
8 13 0.0029 0.22 12.7 5.4 1 23 324 346 324 346 0.98
9 13 8 6e+02 1.9 0.1 13 23 351 361 349 361 0.86
10 13 1 78 4.7 0.8 13 23 368 378 366 378 0.90
11 13 0.00042 0.032 15.4 3.1 1 23 384 406 384 406 0.99
12 13 2.4e-07 1.8e-05 25.6 0.8 1 23 412 434 412 434 0.99
13 13 7.9e-06 0.00059 20.8 6.8 1 23 440 462 440 462 0.98

Sequence Information

Coding Sequence
ATGGCCCACAAAACCAGAGGGCTAACTGTGCCCGAGCTATGCTGCGTTTGCATGGCCATGCCGGGTGCTGGTGTGGACACCAACTGGCTGAATATATACACGGACTTCGATGCGGGACAAGACTTGATGTTTCTAATAGAGGAGACGACAGGCCGAGAGGTCAAGACCGCTGATGATCTACCTGGACGCATATGCCCCTCATGTTTGGCAGCAGCAAAAACTGCTTTAAATTTCAAGCGGCGATTGGAGCAGAGTTTTAAGTTCTGTACCGAGCAGAACAAACCCACTTCCGGCCAGCAGTTCAAGCAAGAGGAGATCTTTGAGAACGACAGCATAAGCGAAGAGAGCGAAGCGGTAAACGACAGCTACAAAAAAAGACCCTACGAGTGCTCCCACTGCTCGGCAACCTTTAACAGTAAGAGCACTCTGGTGAAACACCAGCGCATACATACTGGCGAAAGACCTTTCCAGTGTTCAGAGTGCCTAATGTCCTTTTCCCAACGTGGAACTCTAAGCAGACACCTActtactcatactggcgaacgtgCCTACgcatgttcccactgctcgaagacctttagCAGTAAAAGCGACCTGGAGAAACAccatcgcacacatactggcgaacgaccatttgaatgttcccactgctcaaagacctttgGCAAAAAGGGCAATCTGGAGAGACAccatcgcacacatactggcgaaaagcctttcaagtgtacagagtgctcaatgtcttttaCCCAAAGAGGCACTCTGAAAAGTCATCTTCTCACGCATAGTGGCGATAAACCCTTCGAATGCTCCCACTGCCCAAAGACCTTTGGCCGTAAACGCAATATGGATCTACATCTGcgcacgcatactggcgaacgaccttacaagtgtacagagtgctcaatgaCCTTTGCCCAAAATGCAACTCTAAGGCGTCATCTTCTCACGCATACTGGCGATaaacccttcgaatgttcccactgctcggcGACCTTTAACTGTAAGAGCACTCTGGTGAAACACCAGCGCATACATACTGGCGAAAGGTGTGGAACTCTAAGCAGACACCTACTTACTCATACTGGCGATCGGGCGGTGAAGTGCAATCTGGAGAGACACCATCGCACACATACGGGCGAGAAAGCCTTCGAatgctcccactgctcaaacaacTTTAGCAGTAAACTCAATCTGGATCTACATCTGcgcacgcatactggcgaacgaccttacaagtgtacagagtgcccAAGGTCCTTTCCCCGAAGTGGCTCTCTAAAGAATCATCTTCTCAAGCATACTGGCAAAAAACACTTCGAATGTACCCACTGCTCAAAGATCTTTAGCAGAAAGTTCGATTTGGAGAGACACCATCGGTCACATACGGGCGAGAAAGCCTTCGAATGA
Protein Sequence
MAHKTRGLTVPELCCVCMAMPGAGVDTNWLNIYTDFDAGQDLMFLIEETTGREVKTADDLPGRICPSCLAAAKTALNFKRRLEQSFKFCTEQNKPTSGQQFKQEEIFENDSISEESEAVNDSYKKRPYECSHCSATFNSKSTLVKHQRIHTGERPFQCSECLMSFSQRGTLSRHLLTHTGERAYACSHCSKTFSSKSDLEKHHRTHTGERPFECSHCSKTFGKKGNLERHHRTHTGEKPFKCTECSMSFTQRGTLKSHLLTHSGDKPFECSHCPKTFGRKRNMDLHLRTHTGERPYKCTECSMTFAQNATLRRHLLTHTGDKPFECSHCSATFNCKSTLVKHQRIHTGERCGTLSRHLLTHTGDRAVKCNLERHHRTHTGEKAFECSHCSNNFSSKLNLDLHLRTHTGERPYKCTECPRSFPRSGSLKNHLLKHTGKKHFECTHCSKIFSRKFDLERHHRSHTGEKAFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-