Lmag023466.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa magnipectinata
Gene Symbol
-
Assembly
GCA_018904285.1
Location
JBAMBO010004098.1:163875-165344[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.8e-06 0.00029 21.8 5.2 1 23 154 176 154 176 0.99
2 12 6.2e-07 4.7e-05 24.3 5.9 1 23 182 204 182 204 0.99
3 12 1.9e-06 0.00014 22.8 5.2 1 23 210 232 210 232 0.99
4 12 5.9e-07 4.4e-05 24.3 2.6 1 23 238 260 238 260 0.99
5 12 5.1e-05 0.0038 18.3 3.7 1 23 266 288 266 288 0.99
6 12 1.4e-05 0.001 20.0 2.7 1 23 293 315 293 315 0.98
7 12 0.00063 0.047 14.8 0.4 2 23 322 343 321 343 0.97
8 12 1.3e-06 9.8e-05 23.3 0.5 1 23 349 371 349 371 0.98
9 12 5e-05 0.0037 18.3 2.6 1 23 377 399 377 399 0.99
10 12 6.9e-07 5.2e-05 24.1 1.5 1 23 405 427 405 427 0.99
11 12 3.3e-05 0.0025 18.9 5.5 1 23 433 455 433 455 0.99
12 12 0.00062 0.047 14.8 0.4 1 21 461 481 461 482 0.95

Sequence Information

Coding Sequence
ATGGCCTACAAACCAATACAACCACAAATGGCCGAACAATGCCGCGTTTGCTGGTCCATTTTGGCAGCTGACACCGACTGCAACTGGCGAAATATATTCAGCGATACCAACTCTGCAGCGGAACACGGAGGATTACTGCATATAATAGAAGAGGTGACTTTACACGAGGTTAAACAGGATGAGAATCTACCCGAAAGCATATGCCCTTCATGCTTGGCAGCGGCCAAAACTGCATTTCATTTTAAGCGGCGATTTGAGAAGAGCTTTCAGCTGATGAAACAACACAAATCCACTTCATGCTTGGAAGCACTAAACCAAGAGGAGTCGACACAGTTCGCTCGAGAGAAGACCTTTAAAGTCGAAGACGTAAGCGAAGAAGGCGAAGAGGAAGAGTTTCAATCTCTCAGCGAAAACAGCAGCGAAGATAGTGAGGGTCAAGAGGAGGGACTGAAGCGGCCCTTTGAATGTACCCACTGCTCAAAGACGTATACCTATAAAAGTAGCTACCAGGCTCATCTACGCACTCATTCAGGCGAACGACCCTTTAAATGTGCCCACTGCCCAAAAACCTTTAGTCATAAAGGCAATATGAAGAAGCACATCCGCTCACATACTGGCGAAGAACCCTACAAGTGTACCCATTGCTTAAAAGCCTTTAATCATAAGGGCAGTCTAATTAAGCACATACGCACGcacactggcgaacgaccctacgAATGTTCCCAGTGCTCTAAAACATTCACCCAACAGGAGACTCTAACATATCACCTACGCACACATACGGGCGAGCGCCCCTACAAGTGTGCCCACTGCTCGAAAAGCTATAGCATAAAGCGCAGTCTTAAGATACACCTACGCTCTCATTCTGACGAACCCTTCCACTGTTCGCAATGCCCGCAGACTTTTAAACAAAGAAACGATCTAGTGGAACACCTAAGGACTCATACCGGAGAACAGCCCCTGCAATGTGCCCAGTGTTCGAAAACCTTTCTCGTAGCAGGTAACCTGAAGAAACACCTTCTCACTCATTCCGACgtgcgacccttcgaatgttcttACTGCTCGAAAAGTTTTCGCGCGAAGGGCGCACTTAAAGATCACATACGAattcatacgggcgagcgaccaTACAAGTGTACCAAGTGCTCAAAGAGCTTTAGCCTTGGCCAAACTTTAAGACTACAtctacgcactcatacgggcgaaCGACCATACGAATGTACTCAGTGCTCAAAAACCTTTATCAACAAGAGCAGTCTGGACACGCACATACGCtcacatactggcgaacgaccctacaAGTGTCCACACTGTATTAAAGGTTTTACTCAAAAGTGCAATCTGGATAAGCACAtacgcacacatactggcggaCAGCCGTACGAATGTACCCATTGCTCGGAAACCTTTGACTTATTACGCAATCTTGAGAATCACCAAAGTGTATGTATGGTCGAACGATCGCTTTAG
Protein Sequence
MAYKPIQPQMAEQCRVCWSILAADTDCNWRNIFSDTNSAAEHGGLLHIIEEVTLHEVKQDENLPESICPSCLAAAKTAFHFKRRFEKSFQLMKQHKSTSCLEALNQEESTQFAREKTFKVEDVSEEGEEEEFQSLSENSSEDSEGQEEGLKRPFECTHCSKTYTYKSSYQAHLRTHSGERPFKCAHCPKTFSHKGNMKKHIRSHTGEEPYKCTHCLKAFNHKGSLIKHIRTHTGERPYECSQCSKTFTQQETLTYHLRTHTGERPYKCAHCSKSYSIKRSLKIHLRSHSDEPFHCSQCPQTFKQRNDLVEHLRTHTGEQPLQCAQCSKTFLVAGNLKKHLLTHSDVRPFECSYCSKSFRAKGALKDHIRIHTGERPYKCTKCSKSFSLGQTLRLHLRTHTGERPYECTQCSKTFINKSSLDTHIRSHTGERPYKCPHCIKGFTQKCNLDKHIRTHTGGQPYECTHCSETFDLLRNLENHQSVCMVERSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-