Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.081 1.2e+02 3.4 0.5 14 41 134 158 127 160 0.75

2 6 0.0042 6.5 7.5 0.3 11 30 159 184 155 190 0.74

3 6 0.066 1e+02 3.7 3.5 18 39 206 224 197 228 0.78

4 6 0.0067 10 6.9 2.1 13 40 229 253 222 256 0.82

5 6 0.00014 0.22 12.3 0.5 18 41 262 282 260 284 0.91

6 6 2.2e-05 0.033 14.9 0.6 18 41 290 310 286 312 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.081	1.2e+02	3.4	0.5	14	41	134	158	127	160	0.75
2	6	0.0042	6.5	7.5	0.3	11	30	159	184	155	190	0.74
3	6	0.066	1e+02	3.7	3.5	18	39	206	224	197	228	0.78
4	6	0.0067	10	6.9	2.1	13	40	229	253	222	256	0.82
5	6	0.00014	0.22	12.3	0.5	18	41	262	282	260	284	0.91
6	6	2.2e-05	0.033	14.9	0.6	18	41	290	310	286	312	0.92

Coding Sequence: ATGAACTGCAGCACAAATGTGTCTGACTTATGCTGTGTCTGCATGAGGAGTTCAGAAGCTGACTGGAGTAATATATACACCGACTTCAAAGCGGGAAAACCCTTATCCTTTTTAATTGGAGAGTTGACTGGACGTGTGATTAGACCGCAGGAGCAACAGCAACTACCAGAAAGAATATGCCCCTCATGCTTGGTAGTGGCCAAAACAGCTATTCGTTTCAAGCGTCGATTTGAGCAGAGTCTGCAGCTGATGAGACAAAACGAAAAACGGGTCGACCCAGAGGAATGGCCAAAGCTGTGGGAGCAGAACGAAACAACCACAATCTTGGAAGAACTGACAAACGAGGATTGGAcaaaagtaagcaaagagagcgaaagaGTGCTGAGTTCTCCTACTGGAGAGAAACCCTTCCAGTGTTCCAAATGCTCAAAGAGTTTTAGACGAAGCATTGCTCTAAAAggtcaccttcgcactcatatgGACGAGCAACTGTTCGAGTGTCTTCACTGCTTCAAAACCTTTACCGAAGAAGTCATACTAAATCAACACCTAAGCACTCATACTGCCACTGTTGCCAATCAAACGATTCCAACAGATACGGGCGAGCGACCTTACAAGTGTGACCACTGCATGAAATGCTTTAGCCAAAAACTTCGTTTGGAGAATCACATTCgtacacatactggcgaacaaCCGTACCAATGTTCCCTGTGCTCAAAAACATTTGACGTAAAATCCAACCTAAACAGACACATACGCAATCATTCAGGACAGCGACCCTTTGAATGTATccattgctcgaaaacctttgccGACAACAGCACTCTAAAgtctcaccttcgcactcatacgggcgagcgaccctttgaatgtatccattgctcgaaaacctttgcccAAAACAGTAATCTAAAGACTCACCTTCGTACTCATGCTCGAAAAGCGAAGTTCCAACTAAACGAACATCCAACTTTTTCAAATCTGCCATCTTAA
Protein Sequence: MNCSTNVSDLCCVCMRSSEADWSNIYTDFKAGKPLSFLIGELTGRVIRPQEQQQLPERICPSCLVVAKTAIRFKRRFEQSLQLMRQNEKRVDPEEWPKLWEQNETTTILEELTNEDWTKVSKESERVLSSPTGEKPFQCSKCSKSFRRSIALKGHLRTHMDEQLFECLHCFKTFTEEVILNQHLSTHTATVANQTIPTDTGERPYKCDHCMKCFSQKLRLENHIRTHTGEQPYQCSLCSKTFDVKSNLNRHIRNHSGQRPFECIHCSKTFADNSTLKSHLRTHTGERPFECIHCSKTFAQNSNLKTHLRTHARKAKFQLNEHPTFSNLPS

Sequence clustering based on sequence similarity using MMseqs2