Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.05 76 4.1 0.0 18 39 8 27 4 30 0.80

2 6 0.00041 0.63 10.8 2.3 18 41 145 165 137 167 0.78

3 6 0.0011 1.7 9.4 0.4 18 41 173 193 169 195 0.90

4 6 0.0037 5.7 7.7 0.4 18 41 201 221 197 223 0.89

5 6 0.00011 0.17 12.6 0.2 18 41 229 249 225 251 0.91

6 6 0.0043 6.6 7.5 2.5 18 40 257 276 253 278 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.05	76	4.1	0.0	18	39	8	27	4	30	0.80
2	6	0.00041	0.63	10.8	2.3	18	41	145	165	137	167	0.78
3	6	0.0011	1.7	9.4	0.4	18	41	173	193	169	195	0.90
4	6	0.0037	5.7	7.7	0.4	18	41	201	221	197	223	0.89
5	6	0.00011	0.17	12.6	0.2	18	41	229	249	225	251	0.91
6	6	0.0043	6.6	7.5	2.5	18	40	257	276	253	278	0.93

Coding Sequence: ATGAAACCACCACTAACCATGCAATGCCGTGTTTGCATGTCCAGTTTAGTAGATGCCACCAACACAAACTGGCGACATATTTTCACCGACATCGACGTGGGACAAGGCAGCTTTGGCTTGCTGTTTATAATCGAGGAGGTGACTGGATACGAGCTGAATGCGGATGATAATCTACCCGAATGTATATGCTCTTCATGCTTGGCAGCGGCAAAAACTGCATTCAATTTTAAGCGGCGATTTGAGAAGAGTCTTCAACTGATGAAGCAGAATAAAACGAGGAAAGAGGATTCACTGCAAGTCACTCGAGACAACAACAGCGTAAACGAAGAGAGGGAAATTGACAATTTGGAATCTCTCACTGGAGACGAGCAAATTCGCACTCAAACTGGCAAATTGTCGGTCCCAAACACTGGAAAAGAAAAACGACCCTTGACatgctcccactgctcaaaAAACTATGTCAATAAGGCCTCTCTAACCAGACAtttacgcactcatactggcgagcgtcCTTTCGAATGTTCTcagtgctcgaaaaccttttcCCAAAGCACCAGTCTAAAgtctcaccttcgcactcatacgggcgaacgacccttcgaatgttctcattgctcgaaaacctttggcGAAATTGGCAATCTAAACCAACACCTACGCAcacatactggagaacgaccctttGAATGCTCCTACTGTTCGAAAATCTTTAGCGAAATGGGTAATCTTAAACAACACCTACGCAcccatactggagaacgacccttcaaatgttccgaATGCTCAAAAACCTTTGTCCAAAAACACTGTCTAAAGAGGCACCTACGCATTCATAcaagcgacccttcgaatgttcccaatgTTTGA
Protein Sequence: MKPPLTMQCRVCMSSLVDATNTNWRHIFTDIDVGQGSFGLLFIIEEVTGYELNADDNLPECICSSCLAAAKTAFNFKRRFEKSLQLMKQNKTRKEDSLQVTRDNNSVNEEREIDNLESLTGDEQIRTQTGKLSVPNTGKEKRPLTCSHCSKNYVNKASLTRHLRTHTGERPFECSQCSKTFSQSTSLKSHLRTHTGERPFECSHCSKTFGEIGNLNQHLRTHTGERPFECSYCSKIFSEMGNLKQHLRTHTGERPFKCSECSKTFVQKHCLKRHLRIHTSDPSNVPNV

Sequence clustering based on sequence similarity using MMseqs2