Lmag010038.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- bab1
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010001676.1:40731-42327[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 2.9e-14 53.2 0.0 1 43 55 98 55 100 0.95 2 2 5.1 1.2e+04 -3.3 0.4 6 13 219 226 214 228 0.78
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCACGCTTGGATGGGCGCCACCGGCTCCACATTGGCAGCAGACAGCTATCAGTATCAATTGCAGTCCATGTGGCAAAAGTGTTGGAACACGAATCAAAATCTTATGCATCATATGCGCTTCCGTGAGCGTGGACCGTTGAAATCGTGGCGACCGGAGACCATGGCCGAGGCCATATTCAGTGTGCTCAAGGAGGGACTCTCATTGTCGCAGGCCGCTCGGAAGTATGACATACCGTATCCCACCTTTGTGCTCTATGCGAATCGTGTGCATAATATGCTGGGACCATCGATCGATGGTGGACCCGATTTGAGACCCAAAGGACGTGGACGACCGCAACGCATATTGCTGGGCATCTGGCCGGATGAGCATATCAAGGGTGTGATCAAGACGGTGGTGTTTCGCGATGCGAAGGACATGACAATGAAGGACGATAGTTTGGGATCACATATGCCGCCCTATGGGCGTCATTCGCCCGTATTTCCCTTGCAGGACATGACGCTAGGCTATCCAGGCGCTAGTGGCGGCGGCATGCCGGGCAGCTCCTTAGCCTGTCCCAATGGCATGGGCAGTGCCGGCGTAGCTGGACCTGGCGGCGCAGCTGGACCTGGCGGGGTAGAGCAGCCCATGTCGCAGGAGACAGCGGCAGCTGTGGCCGCTGTGGCGCACAATATACGCCAGCAGATGCAAATGGCTGTTGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCTCCAGGACTGTTCAATTTACCGCCACATTTGGCTGCCGGTCCGGGGGGCAGGGGGAGCATATCGCCAGCGTTGAGCAGTGGCTCAGGTCCTAGGCATGCTCCCTCGCCATGCGGTCCCGCCGGCCTCATGCCGAATCTGCCGCCCAGCATGGCCGTTGCACTGCATCGTGGTGATCCAGCAGCGGCGGCATTGCTcagccaacagcagcagcatcatctgCAACAGTTGcagctgcaacagcagcagcagcaacaacaacaacagcagcagcagcatcatgtcatgcagcagcagcagcagcaggctcaTCATGTCCTGCCGCCGCACAAGTCCGGTTTCGGTGCCAGTTCCATGCCTACGGCTGCCAGtgccgcctcctcctcctcccagcagcagcaccagcagcagcaggataAGTCCAAGCCCAAGTGTAGTCCTTTAAGAAGCGAAACCCCACATTTGCACTCTCCTTTAGCGGATTTGGGTCTAGAGATGAGCAGCTATAAAAGAGATTACTCACCCTCGCGTCTCTTTGCCGAGGATCTGGCTGAGCTAGTGGGAGCCAGTGTGTCTTCCTCCTCCTCGGCCACAACCACGGTAACCACagctgcagctgcagcagctGGCACTGGCACCGATATCagttccagcagcagcagcgctggcATCAAAGTAGAACCCATTACCACCACTAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMTMKDDSLGSHMPPYGRHSPVFPLQDMTLGYPGASGGGMPGSSLACPNGMGSAGVAGPGGAAGPGGVEQPMSQETAAAVAAVAHNIRQQMQMAVAVQHQHGEAGPPPGLFNLPPHLAAGPGGRGSISPALSSGSGPRHAPSPCGPAGLMPNLPPSMAVALHRGDPAAAALLSQQQQHHLQQLQLQQQQQQQQQQQQQHHVMQQQQQQAHHVLPPHKSGFGASSMPTAASAASSSSQQQHQQQQDKSKPKCSPLRSETPHLHSPLADLGLEMSSYKRDYSPSRLFAEDLAELVGASVSSSSSATTTVTTAAAAAAGTGTDISSSSSSAGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914428;
- 90% Identity
- iTF_00917125;
- 80% Identity
- -