Lmag004012.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- -
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010000826.1:915431-916960[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-16 3.3e-13 49.8 0.0 2 45 340 383 339 383 0.95 2 3 0.024 59 4.2 0.0 27 37 412 422 408 427 0.89 3 3 1.2e-19 2.9e-16 59.6 0.0 2 42 449 489 448 491 0.95
Sequence Information
- Coding Sequence
- ATGGGCCACTCGGCGACTATAATGGACATACAACGCTCTCTGCGAGACGACAATGATACCTGCGAGGTTATCTTGGCGGCCAAGGATGGCATCAGTGTTCGCGCCCATCTCTTCGTGCTGAGCACTTGCAGTGATCTGATGCGAAATCTTCTGGTGGATGTGCCGCCCGGGCAGGAGGCCACCATTATTTTACCCGATATACGCGGCGAGCTGCTGGAGACAATGTTGTCGTTCATTTACATGGGCGAGACGAGTTTGCCGTCGGCCTCGTTAACGGAATTTCTGGAAGCCATCAATCTGTTGGGCATCAAGTCGGCCATCAGCTTCGAGTGTAATCCCACTACACAGATGAATACCTCGAGTGTGGACCAAGTGGTGGCTGTGGAAGCGGCCAAGTCCATAAGTGGATTGCAAATTGCTTCGACTGAACTGCTGGAGGAAGAAGAGGCGGCGGATCAGACGCAGGCAACGCAGGAAGATCCGGTAATTGCAAATCCTCAGCCGCAACAGCCAACACCACCCGGCCGTGCCCTGGAATTTCTGGACATGTACAACGAACAGCCTAAAATTACCTATTCCATTGAGCATATGGGCGGCAACAGCAGTGGCAATCAGTATATACTCACCGAGAACACGGGCACTTTTACCATCACCCAATCAGCAGCGGCGCCCATGTCCAAGTTGGATTCCTCCCATGTAGATATGGCTGAAGATGATGACGCCGAAGCTGATGTCACCGATGAGGCAGAGGAGCAGGGGTCGGAGTCGCAACTCATTGAAGAGGAATATGTGGCAGCGGACCCCTTGGTTGATATGCAAACAGATGCAGAAATGGGCGAAGGGGAAAATGATGAGGATGATGAGGCCGAAGAAGAAATGGAAATGGACATAAAAGCCAAACTGGTCCATGCAGCTAAAGTAAAAGACCGTCGTCCGGCCCCTGCTAAGCTCCTAAAGCGGCAATCGGCAAAGCAGCTGCAATTTGTGGCACTCAAGAGCGGGCCCAAGGATGGCATCAACGACGCCCTGGAATTGGCCGCCGAAGCTGTGCTCAACGAAGGCCTCAGTCTGCAAAAGGCCGCCGATCGTTTTGATGTATCCAAAACCGTTCTCTGGCGTCGCGTGCGCTCAAATCCCGAGTACTTGCGCAGCAATCGCGAGAAGCCCTCTCTGTCTGAAGCCTATGAACGTCTGAAGAGTGGCGACTCGCTTAAGAGCATAAGCCAGGATCTGAATATACCCATGTCCACACTGCACCGTCATAAGGTGCGTCTCGCGGCTCAGGGCCGTTTGCCCGATTTTGTGGCCTGCCGGCGACGCGATAGCACACCCAAGGATGAGTTGCGCGATAAGCTGGCCAAGGCCGTGCATGCGTGCATCAACGAGGGCATGTCCCAAAATCATGCGGCCAACCTATTCGAGATACCCAAGAGCACACTGTGGCGCCACCTACAGCGTCGTGTAGCCGCAACCGAACGCAAAGTCAAATTGGAGCAGCATGATGTTGAGGAAGAGGATCTTCTTAACTAG
- Protein Sequence
- MGHSATIMDIQRSLRDDNDTCEVILAAKDGISVRAHLFVLSTCSDLMRNLLVDVPPGQEATIILPDIRGELLETMLSFIYMGETSLPSASLTEFLEAINLLGIKSAISFECNPTTQMNTSSVDQVVAVEAAKSISGLQIASTELLEEEEAADQTQATQEDPVIANPQPQQPTPPGRALEFLDMYNEQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSAAAPMSKLDSSHVDMAEDDDAEADVTDEAEEQGSESQLIEEEYVAADPLVDMQTDAEMGEGENDEDDEAEEEMEMDIKAKLVHAAKVKDRRPAPAKLLKRQSAKQLQFVALKSGPKDGINDALELAAEAVLNEGLSLQKAADRFDVSKTVLWRRVRSNPEYLRSNREKPSLSEAYERLKSGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVAATERKVKLEQHDVEEEDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917324;
- 90% Identity
- iTF_00915460;
- 80% Identity
- iTF_00918275;